PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G312200.2.p | ||||||||
Common Name | Sb02g034180, SORBIDRAFT_02g034180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | SBP | ||||||||
Protein Properties | Length: 216aa MW: 21474.7 Da PI: 10.6921 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.8 | 7.4e-39 | 104 | 182 | 1 | 78 |
--SSTT-----.TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadl.seakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+a+l ++ k y+rrhkvCe+hskapvvlv+gl+qrfCqqCsrfhelsefD+ krsCr rLa+hnerrrk++a Sobic.002G312200.2.p 104 RCQAERCNANLmTDEKPYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDIKRSCRLRLAGHNERRRKSSA 182 6*********735789************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-32 | 97 | 167 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.829 | 102 | 180 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.62E-35 | 103 | 184 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-29 | 105 | 179 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MDRKSKSTKG SAASSAAASM AALAAAAAAG DSSADPGAED NVPAKMAAVG DVSSSSPVAA 60 RRSVAAAGGA ASSSSPVPAA ARRGAAAAAA ASVAAGGGGG GGPRCQAERC NANLMTDEKP 120 YNRRHKVCEA HSKAPVVLVA GLRQRFCQQC SRFHELSEFD DIKRSCRLRL AGHNERRRKS 180 SADAHGGGGA GAGAGNGFRQ HADQNGPAGN HFQIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-33 | 96 | 179 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G312200.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065445 | 1e-130 | BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462902.1 | 1e-148 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q6Z461 | 5e-39 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | C5X9B0 | 1e-147 | C5X9B0_SORBI; Uncharacterized protein | ||||
STRING | Sb02g034180.1 | 1e-148 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 3e-33 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G312200.2.p |
Entrez Gene | 8077483 |