PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G294700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 338aa    MW: 36556.4 Da    PI: 8.3118
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G294700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.62.8e-1222126186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..................rergferspkqCkekwenlnkrykkikegekkr 71 
                           +W+++ +  L+ea++ ++   +r+klk  +W ++++ +                    +   ++p+qCk+k+e+++kry+++ +   + 
  Sobic.002G294700.1.p  22 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsvhcaddaaaagkppgggGGGNSAKTPNQCKNKIESMKKRYRAESAAVARA 110
                           5*****************************************************987888899*****************998766665 PP

              trihelix  72 .tsessstcpyfdqle 86 
                             + +  ++++f +++
  Sobic.002G294700.1.p 111 gPAAAGPSWRFFGRMD 126
                           36777889****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-1320126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDGLPDPDAA PLAAAPPQKR DEWSESGIVR LLEAYEAKWL LRNRAKLKWS DWVDIAREVS  60
VHCADDAAAA GKPPGGGGGG NSAKTPNQCK NKIESMKKRY RAESAAVARA GPAAAGPSWR  120
FFGRMDGLLK GPPVCSAQVQ PPELVNSIDL RAPAKPEAAE VEADFPTQLR DAVPGALSDL  180
MNIDANGAAV PEKAEKVDNS MHKECRPADS DANVSSPRSK VANEDVEEVN NVWDRTKKRK  240
STDFDIAKSI ELLASSFLKI EHARLEMYRE TERMRVEAEI KKGEMELKRT EIMAKTHLQI  300
ARLFAKKLKQ SSGKNGGSSS VTAEVDTLTK KGENGSG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.66540.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G294700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9414854e-98EU941485.1 Zea mays clone 1456327 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309760.10.0trihelix transcription factor ASIL2-like
RefseqXP_021309761.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A1B6QE220.0A0A1B6QE22_SORBI; Uncharacterized protein
STRINGSb02g032600.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.18e-42sequence-specific DNA binding transcription factors