PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G293100.1.p
Common NameSb02g032410, SORBIDRAFT_02g032410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 583aa    MW: 61095.3 Da    PI: 8.2648
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G293100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-055981123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++Cp C k F r  nL+ H+r H
  Sobic.002G293100.1.p 59 FVCPVCQKGFQRDQNLQLHLRGH 81
                          89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-65881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.73E-75881No hitNo description
SMARTSM003550.0065981IPR015880Zinc finger, C2H2-like
PfamPF128749.4E-45981No hitNo description
PROSITE profilePS5015710.4085981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355130100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.73E-7130155No hitNo description
SMARTSM00355100135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MPSSSSAPFF RTSDMQMQPQ GSSLEQNSKK KRNRRPGNPR PDAEVVALSP QTLLATNRFV  60
CPVCQKGFQR DQNLQLHLRG HNMPWKLKPK NPKEACRRVY LCPEPTCVHH DPSRALGDLT  120
GIKKHYSRKH GEKNLKCDKC NKRYAVESDW KAHCKTCGTR EYRCECDALF SRKDSFITHR  180
AMCGTALAAD RTKTAQMPPP CAGLYVGSDS LGLSGGFADE GQSSSAAEAS QMHSFITHRA  240
ICDALALKSA QMPPLGAGLY VGTGSKSLGL SGTAAQMHGF AHQASQSSSA AAAVQFDHIM  300
PSSSGSSSMF RSQASASSSS YFLGGGAPPT AQDFSEDCSQ GSHQAPLLHG KAPFHGLMQL  360
PEQHHQPGPG SSNNAAFANG NNLLNLGFFS AGNNGGGTFG SQDARLVIQD QFNVTGGGSG  420
STAEHGNLMA ASVGSHLSGG FPSLYNNSSA SAAKVQNSAT ALLMKAAQMG STSSTTTHTG  480
SSSLLPVACF TGTVSGQGTS RAAEEGMTQE AHFHDLIMNS LPLMGGTGTD GFAGTAGMAG  540
VDDGNLSTRD FLGVGRDDDA MAPTAGLPNM GALDPTQMKW FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-23131183355Zinc finger protein JACKDAW
5b3h_F1e-23131183355Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G293100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462814.20.0protein indeterminate-domain 9
RefseqXP_021308608.10.0protein indeterminate-domain 9
RefseqXP_021308609.10.0protein indeterminate-domain 9
TrEMBLA0A1B6QE250.0A0A1B6QE25_SORBI; Uncharacterized protein
STRINGSb02g032410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2467946
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.13e-83indeterminate(ID)-domain 4