PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G273300.1.p | ||||||||
Common Name | Sb02g030690, SORBIDRAFT_02g030690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | DBB | ||||||||
Protein Properties | Length: 212aa MW: 23208 Da PI: 5.9716 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.8 | 2.2e-08 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++ lfC ++ lC++C ++ H Sobic.002G273300.1.p 3 TICDVCESAPAVLFCAADEAALCRSCDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 26.9 | 1e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + +C+ +e+ ++ ++Ce +++ lC +C ++ H g H Sobic.002G273300.1.p 52 KLARCDICENSPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91 6789*****************************6655556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.7E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.324 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.77E-8 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 1.0E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.3E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.599 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.5E-7 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.60E-6 | 55 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MRTICDVCES APAVLFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP NKLARCDICE 60 NSPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVPMETVP 120 METKDPENQR DQKKAPKEQM ANHHNGDHPA CDGNCDDQGN IDSKMIDLNM RPVRTHGQGS 180 NSQTQGVDLS VNNHDSPGVV PTSNSERDAS K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G273300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040928 | 0.0 | BT040928.1 Zea mays full-length cDNA clone ZM_BFc0153E05 mRNA, complete cds. | |||
GenBank | EU955839 | 0.0 | EU955839.1 Zea mays clone 1548279 salt tolerance-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460558.1 | 1e-157 | B-box zinc finger protein 18 | ||||
Swissprot | C0SVM5 | 2e-73 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | C5X660 | 1e-155 | C5X660_SORBI; Uncharacterized protein | ||||
STRING | Sb02g030690.1 | 1e-156 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10334 | 22 | 25 | Representative plant | OGRP3352 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 9e-76 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G273300.1.p |
Entrez Gene | 8054891 |