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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G272900.1.p | ||||||||
Common Name | Sb02g030660, SORBIDRAFT_02g030660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 26553.4 Da PI: 5.2261 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 32 | 86 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Sobic.002G272900.1.p 32 KNKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 86 67789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.8 | 3.4e-39 | 33 | 124 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+++L ++ Sobic.002G272900.1.p 33 NKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQ 121 79*************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 l++ Sobic.002G272900.1.p 122 LEK 124 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-19 | 22 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-16 | 31 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.23E-17 | 32 | 89 | No hit | No description |
Pfam | PF00046 | 5.3E-17 | 32 | 86 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-20 | 32 | 95 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.0E-6 | 59 | 68 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-6 | 68 | 84 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.0E-13 | 88 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDGEDDVPEW MMEVGGAGGK GGKGGGGGAL DKNKKRFSEE QIKSLESMFA TQTKLEPRQK 60 LQLARELGLQ PRQVAIWFQN KRARWKSKQL EREYSALRDD YDALLCSYES LKKEKHALLK 120 QLEKLAEMLH EPRGKYGGNA DAGAGDDVRS GVGGMKEEFT DAAGAALYSS EGGGGGKFAH 180 FTDDDVGALF RPSAQPTAAG FTSSSGPPEH QPFQFHSSSC WPSSTTEQTC SSSQWWEFES 240 LSE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 27 | GGKGGGGG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.20465 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00650 | PBM | Transfer from LOC_Os09g35910 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G272900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087258 | 0.0 | BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462710.1 | 1e-179 | homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q651Z5 | 6e-98 | HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6 | ||||
Swissprot | Q9XH35 | 6e-98 | HOX6_ORYSI; Homeobox-leucine zipper protein HOX6 | ||||
TrEMBL | C5X657 | 1e-177 | C5X657_SORBI; Uncharacterized protein | ||||
STRING | Sb02g030660.1 | 1e-178 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7873 | 34 | 48 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 5e-43 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G272900.1.p |
Entrez Gene | 8062073 |
Publications ? help Back to Top | |||
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