PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G271100.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 402aa    MW: 41941.5 Da    PI: 4.6883
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G271100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35441342101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+
  Sobic.002G271100.3.p  44 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANDFFRRGE 123
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           k+ll++i+r+k
  Sobic.002G271100.3.p 124 KRLLCDIHRRK 134
                           *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3735128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5840133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.94E-3541133IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.8E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAEQGGAAPG EAVGSDTTAP APAPAPAPAL AADAAGQRSL PTPFLTKTYQ LVDDPAVDDV  60
ISWNDDGSTF VVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKMVPD RWEFANDFFR  120
RGEKRLLCDI HRRKVALAPA TPVAGLATAA AAAASGAVTV AAAPIPMALP VTRPASPALS  180
TDEQVLSSNS GSAEDHPQAA ASGASGGASA SGDTGEENER LRRENARLTR ELGQMKKLCN  240
NILLLMTKYA SSQQLDASAA LSSVVNCSGE SSEAAPAPPP LPPAILDLMP ACPGLATAAA  300
GLVADADPDQ AARLFGVSIG LKRMRDDDDT GDEQADHGAG GEVKTEASDP QQQQHPSSSN  360
EPSPDQHPWP IYRPTPVYHS MRPCNGPDQG AGSDQDGSNS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-243513812125Heat shock factor protein 1
5d5u_B4e-243413320129Heat shock factor protein 1
5d5v_B4e-243413320129Heat shock factor protein 1
5d5v_D4e-243413320129Heat shock factor protein 1
5hdg_A3e-244413310110Heat shock factor protein 1
5hdn_A3e-244413310110Heat shock factor protein 1
5hdn_B3e-244413310110Heat shock factor protein 1
5hdn_C3e-244413310110Heat shock factor protein 1
5hdn_D3e-244413310110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G271100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0181990.0BT018199.1 Zea mays clone EL01N0559D07.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310589.10.0heat stress transcription factor B-2c
SwissprotQ652B01e-156HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A1W0W6240.0A0A1W0W624_SORBI; Uncharacterized protein
STRINGSb02g030490.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]