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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G269100.1.p |
Common Name | Sb02g030310, SORBIDRAFT_02g030310 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 276aa MW: 28563.9 Da PI: 6.0242 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G269100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 64 | 114 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
+ y+GVr++ grWv+e+r+p ++g +r +lg++ ae Aa+a++aa+++l
Sobic.002G269100.1.p 64 PVYRGVRRRGAAGRWVCEVRVPGKRG--ARLWLGTYLAAESAARAHDAAMLAL 114
68*******************95544..**********************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MDMGRLQQHQ HATCSSSTST SASSTSSSEQ TIKAVVWSPS SSSSPQPPKK RPAGRTKFRE 60 TRHPVYRGVR RRGAAGRWVC EVRVPGKRGA RLWLGTYLAA ESAARAHDAA MLALGRGGAA 120 GCLNFPDSAW LLAVPPPSAI SGLDDARRAA LEAVAEFQRR FGAAAAGGCG SVDEATSGVS 180 APPLSTSSLP GISSGSPAPA PELQQVPVKA GETATALDGD VFEPADWFGD MDMELDVYYA 240 SLAEGLLVEP PPAPAAAWDH GDCCDAGADV ALWSY*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JN853588 | 0.0 | JN853588.1 Sorghum bicolor genotype B35 dehydration responsive element binding protein 1A (DREB1A) gene, complete cds. |