PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G267700.1.p
Common NameSb02g030170, SORBIDRAFT_02g030170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 501aa    MW: 53498.7 Da    PI: 10.0781
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G267700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.88.4e-12348406563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           kr +r   NR++A +s +RK +++ eLe+kv +L+ e ++L +++ + + e+++lk+ +
  Sobic.002G267700.1.p 348 KRVKRILANRISAAKSKERKVKYMGELERKVRVLQMETSTLSSKAASSQRECEALKTMN 406
                           899****************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-14344408IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.312346409IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.27E-10348404No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-11348405No hitNo description
PfamPF001702.4E-10348406IPR004827Basic-leucine zipper domain
CDDcd147036.72E-19349400No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDEDRTADPA RRGRLLSPMT SGQAPQTPPP QTQPQLPMDL ASQYQRRFAP TVFLPPMAPP  60
RLASSSSGFS AFSTYQSLPT LAPPAPGAGS HLARSLPKPP LFSVDSLAPL PYSTAPAAGA  120
AAAVPRSPPS PGGSEQQVPS ASVLPPRGAG HRRSRSDFLV GFSRPNQLPP LPMTTPAAGD  180
YSRSRDASVL EELFRSYRDP NLLVSSGSGG SKNERNDHLS SSQRGWSPAD SSENEAESWA  240
ASGNGNGSGN GNADSSSASH PRHCRSLSVD SIMSNLNFGG PGQVPLRLPP ASPVAVAGGS  300
LSRAGSGASG SAVATASSEL INGEFTESEM KKIMANDRLA EIALADPKRV KRILANRISA  360
AKSKERKVKY MGELERKVRV LQMETSTLSS KAASSQRECE ALKTMNSEMK IRLQAMEQQA  420
QLKDALNEAL TAEVHRLKQI AGEASDPHVP NGSHHHMNRQ ILEQQLLQLQ QKQPSDAQQA  480
QQQQQQESEQ FKAQQKQWNH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G267700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460540.10.0transcription factor VIP1
TrEMBLC5X6120.0C5X612_SORBI; Uncharacterized protein
STRINGSb02g030170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148701820
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.36e-51bZIP family protein