PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G267100.1.p
Common NameSb02g030120, SORBIDRAFT_02g030120
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 297aa    MW: 31907.8 Da    PI: 5.0746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G267100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12120165454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Sobic.002G267100.1.p 120 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 165
                           89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15118183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.34E-11119170No hitNo description
Gene3DG3DSA:4.10.280.102.6E-15120178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-10122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDDLLSPCSS FSPPSPPSFF SHAGHHPVIE FTSCDVPEQW LLDDVFVAKN EGDDDVDDLW  60
PVGSSLSQDS ELTEQPLPPQ PPPPQQQAEL SVVKAPAQQQ RPGKRRGRKP GPRPDGPTVS  120
HVEAERQRRE KLNRRFCDLR AAVPTVSRMD KASLLADAAA YIAELRARIA RLEAESRRAP  180
AARWEPVVAA CGAHEAGPGA GGGADEVVEV RMLGPDAAAV RATSAAPHAP ARLMSALRAL  240
ELHVRHACVT RVNGMTVQDV VVDVATPLQD DDDDDGRLRA ALLQMMQDSA ATYVPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-18119175763Transcription factor MYC2
5gnj_B3e-18119175763Transcription factor MYC2
5gnj_E3e-18119175763Transcription factor MYC2
5gnj_F3e-18119175763Transcription factor MYC2
5gnj_G3e-18119175763Transcription factor MYC2
5gnj_I3e-18119175763Transcription factor MYC2
5gnj_M3e-18119175763Transcription factor MYC2
5gnj_N3e-18119175763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G267100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269711e-152KJ726971.1 Zea mays clone pUT3672 bHLH transcription factor (bHLH95) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462680.10.0transcription factor MYC2
TrEMBLC5X6070.0C5X607_SORBI; Uncharacterized protein
STRINGSb02g030120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1312745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-12NACL-inducible gene 1