PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G267000.1.p
Common NameSb02g030110, SORBIDRAFT_02g030110
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 277aa    MW: 29255 Da    PI: 5.9758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G267000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11110154554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h e Er+RR+++N +f  Lr  +P+       +++Ka+ L  A +YI +L
  Sobic.002G267000.1.p 110 HVESERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAARYIAEL 154
                           8899*********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-15110167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-9110154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15110168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.85E-12110159No hitNo description
SMARTSM003532.3E-10111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDKLTSPSSP RPASFSFSEP SCTILELPSC EVPEQWLLDD DVLVGKNEND GIGACLWEMP  60
AADGGVLSPD SELAKLLPSL SAPAPQRQAK RRGRKPGPRP GPGAGAAAGH VESERQRREK  120
LNRRFCDLRA AVPTVSRMDK ASLLADAARY IAELRARVAQ LESEARHAAV ARWEGISADG  180
GGHGDQAAAV VDGELYVREV GRDTAVVRVT SGASHAPALL MGALRSLELQ VQHACVSRAH  240
GVTTQDVVVD VPPAATALQD DEGLRMALLQ RLQAGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-17110164963Transcription factor MYC2
5gnj_B6e-17110164963Transcription factor MYC2
5gnj_E6e-17110164963Transcription factor MYC2
5gnj_F6e-17110164963Transcription factor MYC2
5gnj_G6e-17110164963Transcription factor MYC2
5gnj_I6e-17110164963Transcription factor MYC2
5gnj_M6e-17110164963Transcription factor MYC2
5gnj_N6e-17110164963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G267000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270127e-50KJ727012.1 Zea mays clone pUT3993 bHLH transcription factor (bHLH109) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460537.10.0transcription factor MYC2
TrEMBLC5X6060.0C5X606_SORBI; Uncharacterized protein
STRINGSb02g030110.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.17e-23bHLH family protein