PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G247800.1.p
Common NameSb02g028420, SORBIDRAFT_02g028420
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 389aa    MW: 40724.1 Da    PI: 8.7033
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G247800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.52.8e-4171146176
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                           +Cqv+gC +dls +k+y+ rhkvC +hsk p v+v+g+eqrfCqqCsrfh+l efD++krsCrrrL +hnerrrk+
  Sobic.002G247800.1.p  71 RCQVDGCGVDLSAVKQYYCRHKVCYMHSKEPRVVVAGIEQRFCQQCSRFHQLPEFDQGKRSCRRRLIGHNERRRKP 146
                           6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3366133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.73569146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.26E-3970150IPR004333Transcription factor, SBP-box
PfamPF031109.7E-3272145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MATGGSGSDD VHGLTFGKKI YFEQDAAVAA AGGSGSGSAT AAAGGRKGKG VATGGGRPAS  60
ASAASATQPP RCQVDGCGVD LSAVKQYYCR HKVCYMHSKE PRVVVAGIEQ RFCQQCSRFH  120
QLPEFDQGKR SCRRRLIGHN ERRRKPPPGP LTSRYGRLAA SFQEPGRFRS FLLDFSYPRV  180
PSSVRDAWQG VQPGGDRMLG TIQWHGNQEP HPHRSAAAGY GNHAYNCHGG LVAGASMLPS  240
AFELPPGGCV AGVTTDSSCA LSLLSTQPWD TTPQSGSHNR SPAMSAAASA FEGTPVAPSV  300
MASSYTASST WTASRDPADG ARNAQQHHDD ALHLVHPGPV HHGHFSGELE LALQGSGPPP  360
PPNMPHVDHG SSSGTFSHST TNAMNWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-28721451184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.133113e-50embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G247800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417770.0BT041777.2 Zea mays full-length cDNA clone ZM_BFb0053F21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462571.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0571e-158SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLC5X3X70.0C5X3X7_SORBI; Uncharacterized protein
STRINGSb02g028420.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-44squamosa promoter binding protein-like 9