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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G247300.3.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 501aa MW: 55731.8 Da PI: 7.4373 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G247300.3.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 34.8 | 3.6e-11 | 192 | 235 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e
Sobic.002G247300.3.p 192 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 235
6777999************************9633355555555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 501 aa
Download sequence Send
to blast |
MVSGGSIKEQ QHEMNISFGM MNHHHQQQPP SSSSSSSMHA AAASFIRSGK EASGAYDHLG 60 ELDQALFMYL DHGSSHVHGG TQQEHQRQTL NIFPSQPMHV EPSPKGEISL VLSPAPVGSK 120 QPARSPDHHH HQHQQAAMEE LAGSRRQQQE HHHLQHQPFA AAAAEPAAPV GMIKDVKPLA 180 KKDHRRGTST SERDPKTLRR LAQNREAARK SRLRKKAYIQ QLESSRIRLA QLEQELHTAR 240 AQGVFFPNSG ILADQGVAGK GVPIGGIDGL SSEAAMFDVE YGRWQEEHYR LMYELRAALQ 300 QHLPEGELQM YVESCLAHHD EMVGIKEGAI KGDVFHLISG VWRSPAERCF LWLGGFRPSE 360 VIKMLLSHVE PLTEQQIVGV YGLQQSALET EEALSQGLEA LYQSLSDTVV SDALSCPSNV 420 ANYMGQMAAA MNKLSTLEGF VRQAENLRQQ TLHRLHQILT TRQMARSLLA MSDYFHRLRT 480 LSSLWVTRPR APQEQQQGHS *
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU966928 | 0.0 | EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds. |