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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G247300.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 428aa MW: 47788.4 Da PI: 9.1313 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G247300.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 35.1 | 2.9e-11 | 119 | 162 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e
Sobic.002G247300.2.p 119 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 162
6778999************************9633355555555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MTIWGNWTRR CSCTWITAAA MSMAARSKSI KGGEISLVLS PAPVGSKQPA RSPDHHHHQH 60 QQAAMEELAG SRRQQQEHHH LQHQPFAAAA AEPAAPVGMI KDVKPLAKKD HRRGTSTSER 120 DPKTLRRLAQ NREAARKSRL RKKAYIQQLE SSRIRLAQLE QELHTARAQG VFFPNSGILA 180 DQGVAGKGVP IGGIDGLSSE AAMFDVEYGR WQEEHYRLMY ELRAALQQHL PEGELQMYVE 240 SCLAHHDEMV GIKEGAIKGD VFHLISGVWR SPAERCFLWL GGFRPSEVIK MLLSHVEPLT 300 EQQIVGVYGL QQSALETEEA LSQGLEALYQ SLSDTVVSDA LSCPSNVANY MGQMAAAMNK 360 LSTLEGFVRQ AENLRQQTLH RLHQILTTRQ MARSLLAMSD YFHRLRTLSS LWVTRPRAPQ 420 EQQQGHS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU966928 | 0.0 | EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds. |