PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G247300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 500aa    MW: 55593.7 Da    PI: 7.3172
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G247300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.6e-11191234141
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                           e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  Sobic.002G247300.1.p 191 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 234
                           6777999************************9633355555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-8187239No hitNo description
SMARTSM003382.6E-7191282IPR004827Basic-leucine zipper domain
PfamPF001703.3E-8192234IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082193235IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.54E-7196237No hitNo description
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
PfamPF141443.0E-28291365IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MVSGGSIKEQ QHEMNISFGM MNHHHQQQPP SSSSSSSMHA AAASFMSGKE ASGAYDHLGE  60
LDQALFMYLD HGSSHVHGGT QQEHQRQTLN IFPSQPMHVE PSPKGEISLV LSPAPVGSKQ  120
PARSPDHHHH QHQQAAMEEL AGSRRQQQEH HHLQHQPFAA AAAEPAAPVG MIKDVKPLAK  180
KDHRRGTSTS ERDPKTLRRL AQNREAARKS RLRKKAYIQQ LESSRIRLAQ LEQELHTARA  240
QGVFFPNSGI LADQGVAGKG VPIGGIDGLS SEAAMFDVEY GRWQEEHYRL MYELRAALQQ  300
HLPEGELQMY VESCLAHHDE MVGIKEGAIK GDVFHLISGV WRSPAERCFL WLGGFRPSEV  360
IKMLLSHVEP LTEQQIVGVY GLQQSALETE EALSQGLEAL YQSLSDTVVS DALSCPSNVA  420
NYMGQMAAAM NKLSTLEGFV RQAENLRQQT LHRLHQILTT RQMARSLLAM SDYFHRLRTL  480
SSLWVTRPRA PQEQQQGHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.146830.0callus| embryo| panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G247300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669280.0EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308081.10.0transcription factor TGA2-like isoform X2
SwissprotQ52MZ21e-170TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A1B6QDA90.0A0A1B6QDA9_SORBI; Uncharacterized protein
STRINGSb02g028380.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-149bZIP family protein