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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G247300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 500aa MW: 55593.7 Da PI: 7.3172 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G247300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 34.8 | 3.6e-11 | 191 | 234 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e
Sobic.002G247300.1.p 191 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 234
6777999************************9633355555555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 500 aa
Download sequence Send
to blast |
MVSGGSIKEQ QHEMNISFGM MNHHHQQQPP SSSSSSSMHA AAASFMSGKE ASGAYDHLGE 60 LDQALFMYLD HGSSHVHGGT QQEHQRQTLN IFPSQPMHVE PSPKGEISLV LSPAPVGSKQ 120 PARSPDHHHH QHQQAAMEEL AGSRRQQQEH HHLQHQPFAA AAAEPAAPVG MIKDVKPLAK 180 KDHRRGTSTS ERDPKTLRRL AQNREAARKS RLRKKAYIQQ LESSRIRLAQ LEQELHTARA 240 QGVFFPNSGI LADQGVAGKG VPIGGIDGLS SEAAMFDVEY GRWQEEHYRL MYELRAALQQ 300 HLPEGELQMY VESCLAHHDE MVGIKEGAIK GDVFHLISGV WRSPAERCFL WLGGFRPSEV 360 IKMLLSHVEP LTEQQIVGVY GLQQSALETE EALSQGLEAL YQSLSDTVVS DALSCPSNVA 420 NYMGQMAAAM NKLSTLEGFV RQAENLRQQT LHRLHQILTT RQMARSLLAM SDYFHRLRTL 480 SSLWVTRPRA PQEQQQGHS*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU966928 | 0.0 | EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds. |