PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G246600.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 434aa    MW: 44933.2 Da    PI: 8.4833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G246600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13363408655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR +i +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  Sobic.002G246600.3.p 363 SIAERVRRTKISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 408
                           689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212357407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-15360411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.76E-13361411No hitNo description
Gene3DG3DSA:4.10.280.104.1E-14362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12363413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-10363408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MYGAPVPKDL NLPAAALPQP TTRAGARTPP HQQQQMSSPG LLRYRSAPST LLGEVMCGDQ  60
DFPAAAAAAG GAGAGHGPPP DHAAAADNVL ARFLAGHHHC SEARDCKPPR PAASAHHFMD  120
EAAAAAASMA ASQQQQLMYQ SSQQQMAAME GLYRNVSSGG TEHGAAVGGA GNNSLIRQSS  180
SPAGFLSHLN MDNGYGSMLR AGMAGGGFRT NGAVSDARLK GQLSFSSRQG SVMSQISEVG  240
SEELDGGSSP ETAAGSNGSG APRGYSGIPG YTMGVSPGAW TDEPSPSPTS GAKRPRDFAG  300
PVPQNVHQQP LAPQLSLPSG NNGGGKPAAA SAEMAAIEKF LQFQDAVPCK IRAKRGCATH  360
PRSIAERVRR TKISERIRKL QELVPNMEKQ TNTADMLDLA VDYIKDLQKQ VLNDGRANCT  420
CSAGKLLQDQ FTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.154890.0callus| embryo| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G246600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9699620.0EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310648.10.0transcription factor bHLH130-like
TrEMBLA0A1B6QDA20.0A0A1B6QDA2_SORBI; Uncharacterized protein
STRINGSb02g028300.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-51bHLH family protein