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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G246600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 394aa MW: 40615.4 Da PI: 9.6077 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.4 | 7.8e-06 | 363 | 391 | 6 | 37 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK 37 +++Er RR +i +++ +L+el+P+ ++K Sobic.002G246600.2.p 363 SIAERVRRTKISERIRKLQELVPNM---EKRK 391 689********************95...4554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.175 | 357 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-5 | 360 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.87E-4 | 361 | 391 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-5 | 362 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MYGAPVPKDL NLPAAALPQP TTRAGARTPP HQQQQMSSPG LLRYRSAPST LLGEVMCGDQ 60 DFPAAAAAAG GAGAGHGPPP DHAAAADNVL ARFLAGHHHC SEARDCKPPR PAASAHHFMD 120 EAAAAAASMA ASQQQQLMYQ SSQQQMAAME GLYRNVSSGG TEHGAAVGGA GNNSLIRQSS 180 SPAGFLSHLN MDNGYGSMLR AGMAGGGFRT NGAVSDARLK GQLSFSSRQG SVMSQISEVG 240 SEELDGGSSP ETAAGSNGSG APRGYSGIPG YTMGVSPGAW TDEPSPSPTS GAKRPRDFAG 300 PVPQNVHQQP LAPQLSLPSG NNGGGKPAAA SAEMAAIEKF LQFQDAVPCK IRAKRGCATH 360 PRSIAERVRR TKISERIRKL QELVPNMEKR KIN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.15479 | 1e-172 | callus| embryo| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G246600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969962 | 0.0 | EU969962.1 Zea mays clone 337883 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310648.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A1B6QDA8 | 0.0 | A0A1B6QDA8_SORBI; Uncharacterized protein | ||||
STRING | Sb02g028300.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G246600.2.p |