PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G236600.2.p | ||||||||
Common Name | Dof7, Sb02g027480, SORBIDRAFT_02g027480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Dof | ||||||||
Protein Properties | Length: 253aa MW: 25792.8 Da PI: 9.4633 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116 | 1.5e-36 | 45 | 101 | 6 | 62 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC +++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss Sobic.002G236600.2.p 45 DPCPRCGARDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSSS 101 57**************************************************98775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-23 | 44 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.323 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.3E-31 | 46 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MQEHGRRPVT PFAGVDLRRP KGYPAPAAVA AAKEAAPARA PVVGDPCPRC GARDTKFCYY 60 NNYNTSQPRH FCKSCRRYWT KGGSLRNVPV GGGTRKSSSS STSSPSATTS ASPGGAAPKN 120 TKRSKNSKRR RVAPAPDPAA PGTDAPTVTA TATADVANTA PSTEAAAATV AASEKPVTMT 180 EEEPAAAVVV ATETKPPAAP GLGLADAGSG GGGKELLPDP SHFEWPSGCD LGSYWGTSVF 240 ADTDPALFLN LP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 131 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.9318 | 6e-51 | root| shoot |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00672 | SELEX | Transfer from GRMZM2G009406 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G236600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582404 | 0.0 | KC582404.1 Sorghum bicolor dof7 protein (dof7) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460395.2 | 1e-179 | dof zinc finger protein MNB1A | ||||
TrEMBL | C5X346 | 1e-179 | C5X346_SORBI; Dof-type zinc finger protein 7 | ||||
STRING | Sb02g027480.1 | 1e-180 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 6e-27 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G236600.2.p |
Entrez Gene | 8063745 |
Publications ? help Back to Top | |||
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