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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G236200.7.p | ||||||||
Common Name | Sb02g027460, SORBIDRAFT_02g027460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 326aa MW: 35299.6 Da PI: 6.244 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 56.3 | 5.8e-18 | 56 | 105 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq Sobic.002G236200.7.p 56 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 105 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-24 | 51 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-19 | 52 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.844 | 54 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-15 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-16 | 56 | 109 | No hit | No description |
SMART | SM00353 | 1.9E-13 | 60 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MESGSRSSGG AGFDDDDALT TRREVSSSLQ DLTVRVDRKG GSCSDGGTDQ RPNTPRSKHS 60 ATEQRRRSKI NDRFQILREL LPHNDQKRDK ATFLLEVIEY IRFLQEKVQK YEATFPEWNQ 120 ENAKMLPWSK GQIPGDSPPD PSHFMRNGSS PGSNFTGKID DNHNIVTSAA ASGAQDQAET 180 DHMASGCYRS AETPANITNN AISQSQPQWT GPSPVDDSAV NSEMLNNQQL AIDEGTISVS 240 SNYSQELLNS LTHALQSSGV DLSQASISVQ INLGKRAVKR PVAPSNSKEP ADPASSNELG 300 HQLMMLGAGA DNLSHTTKRH KPGNS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G236200.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067694 | 0.0 | BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460394.1 | 0.0 | transcription factor BIM2 isoform X2 | ||||
TrEMBL | A0A1W0W5N3 | 0.0 | A0A1W0W5N3_SORBI; Uncharacterized protein | ||||
STRING | Sb02g027460.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-61 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G236200.7.p |
Entrez Gene | 8063743 |