PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G236200.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 339aa    MW: 36960.5 Da    PI: 6.6087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G236200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.26.2e-1856105255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Sobic.002G236200.5.p  56 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 105
                           889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.9E-2451125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.84454104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1954129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-1656109No hitNo description
PfamPF000102.3E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1360110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MESGSRSSGG AGFDDDDALT TRREVSSSLQ DLTVRVDRKG GSCSDGGTDQ RPNTPRSKHS  60
ATEQRRRSKI NDRFQILREL LPHNDQKRDK ATFLLEVIEY IRFLQEKVQK YEATFPEWNQ  120
ENAKMLPWSN MYFRSFWKNA QSKGQIPGDS PPDPSHFMRN GSSPGSNFTG KIDDNHNIVT  180
SAAASGAQDQ AETDHMASGC YRSAETPANI TNNAISQSQP QWTGPSPVDD SAVNSEMLNN  240
QQLAIDEGTI SVSSNYSQEL LNSLTHALQS SGVDLSQASI SVQINLGKRA VKRPVAPSNS  300
KEPADPASSN ELGHQLMMLG AGADNLSHTT KRHKPGNS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G236200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341600.0BT034160.1 Zea mays full-length cDNA clone ZM_BFc0028P04 mRNA, complete cds.
GenBankBT0539890.0BT053989.1 Zea mays full-length cDNA clone ZM_BFc0097D18 mRNA, complete cds.
GenBankBT0693790.0BT069379.1 Zea mays full-length cDNA clone ZM_BFb0124F01 mRNA, complete cds.
GenBankEU9568110.0EU956811.1 Zea mays clone 1574597 transcription factor BIM2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021308858.10.0transcription factor BIM2 isoform X1
TrEMBLA0A1B6QD650.0A0A1B6QD65_SORBI; Uncharacterized protein
STRINGSb02g027460.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.17e-63BES1-interacting Myc-like protein 2