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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G230000.1.p | ||||||||
Common Name | Sb02g026920, SORBIDRAFT_02g026920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 23831.8 Da PI: 8.4056 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 32 | 78 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+Er+RR+riN +++Lr+llP a +++Ka+ L ++v+++++L Sobic.002G230000.1.p 32 RSHSEAERKRRQRINAHLATLRTLLPAA-----SRMDKAALLGEVVRHVREL 78 78*************************9.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-13 | 32 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.23E-12 | 32 | 79 | No hit | No description |
Pfam | PF00010 | 8.2E-11 | 32 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-14 | 32 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-12 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 6.6E-5 | 132 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVPVGSDEAA EVAVDGECSP PAATTTRSGT SRSHSEAERK RRQRINAHLA TLRTLLPAAS 60 RMDKAALLGE VVRHVRELRG EADAAAAGVA VAVPGEGDEV GVEEGQQHCF CHGGERERAA 120 AAANTRRVRA WVCCADRPGL MSELGRAVRS VSARAVRAEI ATVGGRTRSV LELDVVGGHH 180 DGEGTSTSSR PALQAALRAV LLSREEMLGA ECYKRQRFSA HLARV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 42 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G230000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969102 | 0.0 | EU969102.1 Zea mays clone 326075 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460360.1 | 1e-157 | transcription factor bHLH30 | ||||
TrEMBL | C5X2Y6 | 1e-155 | C5X2Y6_SORBI; Uncharacterized protein | ||||
STRING | Sb02g026920.1 | 1e-156 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 6e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G230000.1.p |
Entrez Gene | 8083243 |