PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G225300.1.p
Common NameSb02g026590, SORBIDRAFT_02g026590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 316aa    MW: 33807 Da    PI: 9.9398
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G225300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.34.4e-32271182102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+++++e+++++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g+
  Sobic.002G225300.1.p  27 FLTKTHQMVEERATDEVISWAEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANDNFRRGE 106
                           9*****************************************************************99.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           + ll+ i+r+k 
  Sobic.002G225300.1.p 107 QGLLSGIRRRKP 118
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-5323116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2827116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-172750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-177890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEEAGVAVVA SKQSGGGVRG GGGPAPFLTK THQMVEERAT DEVISWAEQG RSFVVWKPVE  60
LARDLLPLHF KHCNFSSFVR QLNTYGFRKV VPDRWEFAND NFRRGEQGLL SGIRRRKPTT  120
PQSSNKSGGS GGVNVAFPPP LPPPPAPPAS GTTSGGGGNE RSSSSASSPP RADQLTSENE  180
QLKKDNHTLS TELAQARRHC EELLGFLSRF LDVRQLDLGL LMQGEEDVRA AGAAGDGALQ  240
AQRRAVVNHQ LERGRGGEEG KSVKLFGVLL KDAAARKRGR CEEAVASERP IKMIRVGEPW  300
VGVPSSGPGR CGGEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-19271165105Heat shock factor protein 2
5d8l_B2e-19271165105Heat shock factor protein 2
5d8l_D2e-19271165105Heat shock factor protein 2
5d8l_F2e-19271165105Heat shock factor protein 2
5d8l_H2e-19271165105Heat shock factor protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.170060.0callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G225300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277540.0KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460330.10.0heat stress transcription factor B-1
SwissprotQ67TP91e-129HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLC5X2A90.0C5X2A9_SORBI; Uncharacterized protein
STRINGSb02g026590.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-47heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]