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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G225100.1.p |
Common Name | Sb02g026570, SORBIDRAFT_02g026570 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 367aa MW: 39197.5 Da PI: 9.7309 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G225100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 43.8 | 5.7e-14 | 287 | 337 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55
+r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + e+ ++
Sobic.002G225100.1.p 287 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNQELERKQAEIMEM 337
79************************************9998877777766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 367 aa
Download sequence Send
to blast |
MEFKNWGSSS QRRPAVVVDE GQPLARQGSV YSLTFDEFQS ALGGAATGGG GGGSGGIPKD 60 FGSMNMDELL RSIWTAEETQ AMASASAAGA GAGMPLTPLQ RQGSSLTLPR TLSAKTVDEV 120 WRNLVRDEPP QAQVADGGGH HQQHRQSTLG EMTLEEFLVR AGVVRENPAP APPAPQPLTM 180 MPPRPVPVAP KSSAFFGNLP GADDAAAAAA LGFAPVGMGD LALIPPRAAA GMGGSAMAVQ 240 TAVNQQLDSG GKGYSDLSSP TEPLPFSFEG MIRGRRHGGG VEKVVERRQR RMIKNRESAA 300 RSRARKQAYT MELEAEVQKL KELNQELERK QAEIMEMQKN ETPEMLKDPF GRKKRLCLRR 360 TLTGPW*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT036367 | 0.0 | BT036367.2 Zea mays full-length cDNA clone ZM_BFb0108N12 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G49720.2 | 6e-35 | abscisic acid responsive element-binding factor 1 |
Publications
? help Back to Top |
- Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] - Kobayashi Y, et al.
Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] - Kobayashi F,Maeta E,Terashima A,Takumi S
Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]
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