PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G225100.1.p | ||||||||
Common Name | Sb02g026570, SORBIDRAFT_02g026570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 367aa MW: 39197.5 Da PI: 9.7309 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.8 | 5.7e-14 | 287 | 337 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + e+ ++ Sobic.002G225100.1.p 287 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNQELERKQAEIMEM 337 79************************************9998877777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-11 | 283 | 347 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.806 | 285 | 336 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-11 | 287 | 338 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.2E-14 | 287 | 336 | No hit | No description |
SuperFamily | SSF57959 | 3.19E-10 | 287 | 335 | No hit | No description |
CDD | cd14707 | 2.46E-24 | 287 | 339 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 290 | 305 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEFKNWGSSS QRRPAVVVDE GQPLARQGSV YSLTFDEFQS ALGGAATGGG GGGSGGIPKD 60 FGSMNMDELL RSIWTAEETQ AMASASAAGA GAGMPLTPLQ RQGSSLTLPR TLSAKTVDEV 120 WRNLVRDEPP QAQVADGGGH HQQHRQSTLG EMTLEEFLVR AGVVRENPAP APPAPQPLTM 180 MPPRPVPVAP KSSAFFGNLP GADDAAAAAA LGFAPVGMGD LALIPPRAAA GMGGSAMAVQ 240 TAVNQQLDSG GKGYSDLSSP TEPLPFSFEG MIRGRRHGGG VEKVVERRQR RMIKNRESAA 300 RSRARKQAYT MELEAEVQKL KELNQELERK QAEIMEMQKN ETPEMLKDPF GRKKRLCLRR 360 TLTGPW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.21427 | 0.0 | shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves and embryos. {ECO:0000269|PubMed:10611387}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G225100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036367 | 0.0 | BT036367.2 Zea mays full-length cDNA clone ZM_BFb0108N12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310056.1 | 0.0 | bZIP transcription factor TRAB1 | ||||
Swissprot | Q6ZDF3 | 1e-114 | TRAB1_ORYSJ; bZIP transcription factor TRAB1 | ||||
TrEMBL | C5X2A7 | 0.0 | C5X2A7_SORBI; Uncharacterized protein | ||||
STRING | Sb02g026570.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 | Representative plant | OGRP540 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49720.2 | 6e-35 | abscisic acid responsive element-binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G225100.1.p |
Entrez Gene | 8063702 |
Publications ? help Back to Top | |||
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