PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G224200.1.p
Common NameSb02g026500, SORBIDRAFT_02g026500
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HSF
Protein Properties Length: 419aa    MW: 44005.2 Da    PI: 9.1549
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G224200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35271202103
                           HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
          HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                           Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg
  Sobic.002G224200.1.p  27 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKG 106
                           9********************6667*****************************************999.........*********** PP

                           XXXXXXXXXXXXXX CS
          HSF_DNA-bind  90 kkellekikrkkse 103
                           +k+ll++i+r+k++
  Sobic.002G224200.1.p 107 EKQLLCEIHRRKTS 120
                           ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3616112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5823117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.61E-3124117IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3027117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MERCGSWDCD AAAAAQAAAQ KAVPAPFLTK TYQLVDDPAT DHIVSWGDDR VSTFVVWRPP  60
EFARDILPNY FKHNNFSSFV RQLNTYGFRK VVPERWEFAN EFFRKGEKQL LCEIHRRKTS  120
TSTASPSPPP FFVPPHHFPL FHPGAPHHHH HHQFDDGVVA AAARAGVGLA FPHHPHWREP  180
HAAAPGPVAA TRLLALGAPP PAPSPSPSPS PLPSAADAGG NNAGRAATAA VLMEENERLR  240
RSNTALLQEL AHMRKLYNDI IYFVQNHVRP VAPSPAAAAF LQGLGLQAAA RKKQPTAAAA  300
PVSAAGLNHN HSGGSTTSSS SLTIAEEPSP PPPPPQQQAD KSGGGGEGGS SGTARSATML  360
FGVHLSAAPS GAGGTKRPAS PEETDQPPAS PARKPRLALE GADLSLTVAA ASSPASTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-221812212125Heat shock factor protein 1
5d5u_B7e-221711920131Heat shock factor protein 1
5d5v_B7e-221711920131Heat shock factor protein 1
5d5v_D7e-221711920131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G224200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9661741e-172EU966174.1 Zea mays clone 292275 AT-HSFB4 mRNA, complete cds.
GenBankKJ7279731e-172KJ727973.1 Zea mays clone pUT6087 HSF transcription factor (HSF2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460323.10.0heat stress transcription factor B-4c
SwissprotQ67U941e-146HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLC5X2A00.0C5X2A0_SORBI; Uncharacterized protein
STRINGSb02g026500.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-57heat shock transcription factor B4