PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G221400.1.p
Common NameSb02g026230, SORBIDRAFT_02g026230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 500aa    MW: 53450.5 Da    PI: 8.6343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G221400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-066789123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C++Cg+ F r  nL+ H r+H
  Sobic.002G221400.1.p 67 YVCEICGQGFQRDQNLQMHRRRH 89
                          9*********************9 PP
2zf-C2H211.60.00085146167223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C  C+k +  +s++k H++t+
  Sobic.002G221400.1.p 146 ACARCSKAYAVHSDYKAHLKTC 167
                           6*******************98 PP
3zf-C2H210.80.0016175193523
                           TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                           dCg++Fsr +++  H+ t+
  Sobic.002G221400.1.p 175 DCGRVFSRVESFIEHQDTC 193
                           9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.33E-66689No hitNo description
PROSITE profilePS5015711.6356789IPR007087Zinc finger, C2H2
SMARTSM003550.00326789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355110109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4136166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.33E-6140165No hitNo description
SMARTSM00355230145172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MLGFCAPAAG PPPDEATPEP FRSLQIATCT AAAAATTKKK RRPAGTPDPD AEVVSLSPRT  60
LLESDRYVCE ICGQGFQRDQ NLQMHRRRHK VPWKLLKREA GEAARKRVFV CPEPSCLHHD  120
PSHALGDLVG IKKHFRRKHS GQRQWACARC SKAYAVHSDY KAHLKTCGTR GHSCDCGRVF  180
SRVESFIEHQ DTCNAGRARA DAASPACGAG VAAAASAGSQ QQAPPAMSLS RTASSTRTSP  240
SSDIAISPVA WPGSAPAIPS PTTAAFHRFE QVPSPRTPPS DHRRGGHHNL ELQLMPPSCG  300
GAPRTPAAVP PQSHHAAAMQ LQLSIGVCGG GIGDDAGERG GEVVMLAAAA REKEEEAREQ  360
LRQAVAEKAA ADEARAQAKR HAELAEQELA SAKRMRRQAQ VELSRAHALR EHAVRQVNAT  420
LLQITCLGCR HKFRARAPQL MMDAAVAGPE VACSYMSSVV TAEGGDAEVV DDEPPPLDGA  480
DAMLQRRRQQ HAMAMDVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17141195357Zinc finger protein JACKDAW
5b3h_F2e-17141195357Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KKKRR
23742KKKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G221400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460306.10.0protein indeterminate-domain 16
TrEMBLC5X2680.0C5X268_SORBI; Uncharacterized protein
STRINGSb02g026230.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-101indeterminate(ID)-domain 14