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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G220300.1.p |
Common Name | Sb02g026150, SORBIDRAFT_02g026150 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
HD-ZIP |
Protein Properties |
Length: 370aa MW: 39124.8 Da PI: 7.3979 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G220300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 55.2 | 1.2e-17 | 187 | 241 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k
Sobic.002G220300.1.p 187 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 241
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 126.3 | 1.3e-40 | 187 | 277 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr
Sobic.002G220300.1.p 187 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR- 274
69*************************************************************************************9. PP
HD-ZIP_I/II 90 elk 92
+lk
Sobic.002G220300.1.p 275 ALK 277
555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MELGLSLGET MADAGRDLVL GLGMGVVGVR REEEAAERGS RRDRDARREL EFGTTGWCGA 60 RSSPEPPAVR LTLLPGLVPR LGGLPWPPPP PPPPPSSETN RHLEASTTRG FDVNRAPSLS 120 VAGAAAAEED EEHDEAGAAA ASSSPNNSAG SFPTDFSAQG GQVAPGGGGD RGACSRASDD 180 DDGGSARKKL RLSKEQSAFL EESFKEHATL NPKQKLALAK QLNLRPRQVE VWFQNRRART 240 KLKQTEVDCE YLKRCCETLT EENRRLQKEL AELRALKTVH PFYMHLPATT LSMCPSCERV 300 ASNSSAPAVA PVAPASSPSP AATGIAASSA PSEQQRPSSF AALFSSPLNR PLVAAQAQPQ 360 PRPQAPASS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 235 | 243 | RRARTKLKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT036447 | 0.0 | BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds. |
GenBank | KJ726911 | 0.0 | KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds. |