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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G202700.1.p |
Common Name | Sb02g024760, SORBIDRAFT_02g024760 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 328aa MW: 34720.6 Da PI: 6.8776 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G202700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 93.6 | 1.4e-29 | 166 | 225 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++++ tYegeHnh+
Sobic.002G202700.1.p 166 VKDGYQWRKYGQKVTRDNPSPRAYFRCAYApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 225
58***************************99****************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0002237 | Biological Process | response to molecule of bacterial origin |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009751 | Biological Process | response to salicylic acid |
GO:0010200 | Biological Process | response to chitin |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0050691 | Biological Process | regulation of defense response to virus by host |
GO:0050832 | Biological Process | defense response to fungus |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042802 | Molecular Function | identical protein binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MLLMDSARRA GCSPSPVCLD LSVGLSPSSP GSSGPETTAD TDDRLDRPAA GCRVASSLSD 60 EQAKTLEAKL TQVSEENRRL TEMIAYLYAS QVARQSSSSP DTTSRKRSRD SLEPPSNSSD 120 GNANAKAEPG DHAAVESALS DEGTCRRIKV TRVCTRIDPA DATLTVKDGY QWRKYGQKVT 180 RDNPSPRAYF RCAYAPSCPV KKKVQRSAED SSLLVATYEG EHNHPSPTRA GELPSSASAT 240 ASGPVPCSIS INSSGPTITL DLTKNGGGGG VRVLDAAEAP DLKKLCQEIA SPDFRTALVE 300 QMARSLTSDS KFTHALAAAI LQQLPEY*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT035304 | 1e-136 | BT035304.1 Zea mays full-length cDNA clone ZM_BFb0054B07 mRNA, complete cds. |
GenBank | BT068493 | 1e-136 | BT068493.1 Zea mays full-length cDNA clone ZM_BFb0234B18 mRNA, complete cds. |
GenBank | EU518772 | 1e-136 | EU518772.1 Zea mays WRKY DNA-binding protein (WRKY) mRNA, complete cds. |
GenBank | KJ726810 | 1e-136 | KJ726810.1 Zea mays clone pUT3166 WRKY transcription factor (WRKY53) mRNA, partial cds. |