PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G202600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 466aa    MW: 46142.5 Da    PI: 7.004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G202600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12260305555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Sobic.002G202600.1.p 260 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 305
                           99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.44E-13253309No hitNo description
SuperFamilySSF474595.76E-17253315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16257314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9260305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MQPTTREMQA MAAAGQISLD DLRAAAGAAG GGVHDDFLDQ MLGGLPPSAW PELASAAGGK  60
APDGGAQAEG MQQHQHQHQH FGGGLYDESA LLASRLRQHQ ISGGPTGGGA EAAKQMVLQQ  120
LADLRQGHHM LLQGMGRSTG GGGGSGDGGL LLPLSLGSGG SGGDVQALLK AAANSAGGEA  180
AGVFGGSFAG SLQQQQQQHF QSHPQQQTAP LPGQGFGGGG GGAGASGGVS QPQAGAAGGG  240
AAAPPRQRVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY  300
VKFLQLQVKV LSMSRLGGAA AVAPLVADMS SEGRGGAGAA AAAGSDGGLA VTEQQVAKLM  360
EEDMGTAMQY LQGKGLCLMP VSLASAISSA TCHMRPPVGA AGLGVAAAAA HHMAAMRLPP  420
HGMNGGAGAD ASAMANGAGA GGADGDASHS QQQQHSKDAA SVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G202600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620760.0BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279380.0KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307995.10.0transcription factor bHLH66 isoform X1
TrEMBLA0A1W0W5280.0A0A1W0W528_SORBI; Uncharacterized protein
STRINGGRMZM2G350165_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-44LJRHL1-like 1