PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G201400.1.p
Common NameSb02g024650, SORBIDRAFT_02g024650
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ZF-HD
Protein Properties Length: 382aa    MW: 39387.1 Da    PI: 7.9252
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G201400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.57.6e-343589558
           ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                           Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr+ e
  Sobic.002G201400.1.p 35 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACGCHRNFHRRTLE 89
                          7***************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-283587IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.1723687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-223686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-313687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.06E-16223293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-28229294IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-23235291IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEAMDVKYKP VMFPNGAALK KAVKPAAVAP AGEPLYRECL KNHAASLGGH AVDGCGEFMP  60
SPGANPADPT SLKCAACGCH RNFHRRTLEG SPPPPHAPAP LALPPPASVL MHGHPHRGGE  120
ETPEDRHHPG VVDADDSDSD SEGSEYDEER SVSPPPPPHA PSHHHVPAPV AQQPPPYFAT  180
APHMLLSLGS GGAPGAAVAA AASAAQRLQA PAPQQLTPSS APPGPGGVGA MPMPRKRFRT  240
KFTAEQKQRM QELSERLGWR LQKRDEAIVD EWCRDIGVGK GVFKVWMHNN KHNFLGGHSA  300
RRSASASASA GACAPLQTPG GAAAPSSFNP SRITPPPPVL TSSPTSATGF NINGAASSAP  360
TVVTADHTDN AANGASSPQS A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-212352931775ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.73510.0embryo
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G201400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632440.0BT063244.1 Zea mays full-length cDNA clone ZM_BFc0042E24 mRNA, complete cds.
GenBankEU9637460.0EU963746.1 Zea mays clone 272337 ZF-HD homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462378.20.0zinc-finger homeodomain protein 9
SwissprotQ6ER219e-97ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A1B6QCI20.0A0A1B6QCI2_SORBI; Uncharacterized protein
STRINGSb02g024650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP1472434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-25zinc finger homeodomain 1