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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.002G199200.1.p |
| Common Name | Sb02g024530, SORBIDRAFT_02g024530 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
NAC |
| Protein Properties |
Length: 322aa MW: 35179.2 Da PI: 5.0946 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.002G199200.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 143 | 1.6e-44 | 15 | 151 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatg 87
lppGfrF+Ptdeel+++yL++kv++ ++ +++evd+yk+ePwdL p++ ++ + yfF++r+ k ++g r+nrat++gyWk+tg
Sobic.002G199200.1.p 15 LPPGFRFRPTDEELLTHYLAPKVADAGFDP-AALREVDLYKAEPWDLlPAEGGEDGGGVgYFFCRRSVKFPSGLRTNRATRAGYWKSTG 102
79*************************999.78**************4444433333446***************************** PP
NAM 88 kdkevlskkgel........vglkktLvfykgrapkgektdWvmheyrl 128
kd+ v++++++ g++ktLvfy+grap+g+kt+W+mheyrl
Sobic.002G199200.1.p 103 KDRVVVASRSSSsrgdddcpLGVRKTLVFYRGRAPTGHKTSWIMHEYRL 151
******98444455666777***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MEGDGDGRRA APGPLPPGFR FRPTDEELLT HYLAPKVADA GFDPAALREV DLYKAEPWDL 60
LPAEGGEDGG GVGYFFCRRS VKFPSGLRTN RATRAGYWKS TGKDRVVVAS RSSSSRGDDD 120
CPLGVRKTLV FYRGRAPTGH KTSWIMHEYR LLHGHGYTSP VVHATAGAQS EWVICRMFMK 180
KAPGETSQPE QEEAVLHPPL EDHMQPPPVD DCGGETPAPA AAASDSDHQH VNCFSNIALA 240
MVPGDTNFHG IESMLQLNRH GHEELWMNYP ESTYPPVAAA STSGSAEAAL RLRDELVADS 300
SFDLLPQLLD YDEAFPFLQD F*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-38 | 15 | 185 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-38 | 15 | 185 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-38 | 15 | 185 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-38 | 15 | 185 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-38 | 15 | 185 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 3e-38 | 15 | 185 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 3e-38 | 15 | 185 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 3e-38 | 15 | 185 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 3e-38 | 15 | 185 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 3e-38 | 15 | 185 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 3e-38 | 15 | 185 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 3e-38 | 15 | 185 | 20 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 2e-38 | 15 | 185 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 2e-38 | 15 | 185 | 17 | 170 | NAC domain-containing protein 19 |
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