PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G184400.1.p
Common NameSb02g023230, SORBIDRAFT_02g023230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 305aa    MW: 32151.7 Da    PI: 7.3062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G184400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-21118167255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Sobic.002G184400.1.p 118 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 167
                           59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-30117177No hitNo description
SuperFamilySSF541715.17E-23118177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.5E-33118177IPR001471AP2/ERF domain
PROSITE profilePS5103223.354118175IPR001471AP2/ERF domain
SMARTSM003801.5E-35118181IPR001471AP2/ERF domain
PRINTSPR003672.6E-11119130IPR001471AP2/ERF domain
PfamPF008477.7E-15119167IPR001471AP2/ERF domain
PRINTSPR003672.6E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASSAPHGS SPLLHPHHQP LSPSSPFSFH HAAAYGGYPF  60
AAAAAEGAGQ LSPAQMQYIQ ARLHLQRQSQ QSSVLGPRAQ PMKASAAAAP TPPRPQKLYR  120
GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDQ AAYRLRGDAA RLNFPDNAAS  180
RGPLHASVDA KLQTLCQNIA ASKKGAKKHA SASAAAAAAT SSSAPTSNCS SSPSSDDASS  240
SCCLESAAES SCPSPSPSAS PESSTVPEMQ QLDFSEAPWD EAAGFALTKY PSYEIDWDSL  300
LAAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20117175463ATERF1
3gcc_A3e-20117175463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.179240.0ovary| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G184400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278360.0KJ727836.1 Zea mays clone pUT5789 AP2-EREBP transcription factor (EREB109) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460137.20.0ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1B6QC620.0A0A1B6QC62_SORBI; Uncharacterized protein
STRINGSb02g023230.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-33related to AP2 4