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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G174200.1.p |
Common Name | Sb02g022280, SORBIDRAFT_02g022280 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 311aa MW: 32898.5 Da PI: 5.987 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G174200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 84.5 | 9.7e-27 | 107 | 166 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
dDg++WrKYGqK++ g+++pr+YYrCt++ gC ++k+v+r++edp+ ++++Y g+H++
Sobic.002G174200.1.p 107 DDGHSWRKYGQKDILGAKHPRGYYRCTHRhsqGCAATKQVQRTDEDPTSFDVVYLGDHTC 166
8***************************98999*************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0048527 | Biological Process | lateral root development |
GO:0005730 | Cellular Component | nucleolus |
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MAASVVDGNG GSGGLVVTEL GHVKELARQL EAQLGGSSPD LCKHLASQIS SIAERSISLL 60 ITTSSGLAGA RKRSAVPFVK GTKKRKTMDK KRHEVRVSSA AGDHPADDGH SWRKYGQKDI 120 LGAKHPRGYY RCTHRHSQGC AATKQVQRTD EDPTSFDVVY LGDHTCVQSQ WAAAAGQAAA 180 DALAPEYNGK PGTNLTVKTE GPTVEPAEQQ VQGWDAPTPF CFSSTPATAT ASWCLVPELS 240 PPFSAPSTSN NWGVSPATSD SNHVVSFPPF EVAGDDVQFG RFEEVMSAID RADGDGFLDD 300 LDIDVSSFLV *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 70 | 85 | RKRSAVPFVKGTKKRK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU971309 | 1e-150 | EU971309.1 Zea mays clone 361886 WRKY74 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds. |