PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G168400.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 930aa    MW: 105105 Da    PI: 8.6095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G168400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.8e-11863908655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++Er RR +i +++ +L+el+P+     +k  +  ++L +Av+YIk+Lq
  Sobic.002G168400.2.p 863 SIAERERRMKISERIRKLQELVPNM----DKQSNIPDMLDLAVDYIKDLQ 908
                           689*********************7....5779999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.102.7E-54878IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525408.34E-49173442IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3006.8E-13187341IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.3E-47187470IPR002182NB-ARC
PRINTSPR003641.1E-12208223No hitNo description
PRINTSPR003641.1E-12280294No hitNo description
PRINTSPR003641.1E-12377391No hitNo description
Gene3DG3DSA:3.80.10.102.7E-5543732IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520471.33E-5590732No hitNo description
PROSITE profilePS5088814.024857907IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-8861912No hitNo description
SuperFamilySSF474593.53E-13861921IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-13862920IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7863908IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-9863913IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043531Molecular FunctionADP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MEAPTSPLDG PILKLPWKLD KLLRHGFILP KGVEDEIPLI KRDLGEIISI LSNLDDHHAM  60
KVSCWRKEVR ELSYDMEDFV DQYEHATAMS LAGSVPRRKI IQKRKSKAAL SRPWKKLKQR  120
LWMANKIREF SMRTQEALQR HRMYHLDAIA VSGSTTSTRC TCTDACSNSS HSTPCGEENA  180
YVGISAAMEK LQELLLTMHD EGDWRLKVVS IVGLGGIGKT TLANEFYRKL GPQFECRAFV  240
RTSQKPDTRR IFISMLSQIR PHQLPDNWTV HSLISTIRTH LQDKRYLIIV EDICVTTTWD  300
IVKCALPDNN CGSRILTTTE IEDLALASSD HDPKFVYKMQ PLSEDDSRKL FFSSLCGIQH  360
ECPPNLREIS YNVISKCGGL PLAIVTVASI LSSQQGIQDQ LDYVNKSIGY SLLMNPISEG  420
MKQVLDLSYN SLPQNLKACI LYTGLYEEDI IIWKDDLVNQ WIAEGFIEAT EGQDKKEIAR  480
SYFDRLISRK LILPVYINKN GEVLSCVVHR MVLNLVIRYK SIEENFVTPI HNSQATTTLS  540
DKVQTEHMYN KMELLLNTVL GRLSSLKSLT LVPRASSYAN SIHDPGTTGM IISGGLCSLL  600
SAPGLLQSLE ISPWIYIFLC PPKWIGQLHN LCILKFGVIK IDRDDVNVLR GLPALAVLSL  660
YVQTKPAERV VIGKTGFPVI KYFRFKCCGP WLKFEEGAMP NLRKLKLAFN ACNPVELITI  720
PVGIRYLSNL KEVSAKIGGA SPDESHRKAR ATELALRDEI RVHGRCQRVN IQCVKQIIGG  780
KDDQSYITTV EDHVTLKLKQ NKIKDEDEEN SIEQVEITKD HSRAHQFSLP KTKTSSETAA  840
VAVDKLLHFH DALPLKTTTH PRSIAERERR MKISERIRKL QELVPNMDKQ SNIPDMLDLA  900
VDYIKDLQKQ IKALNESRAR CSCSASKHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C8e-38172517151496Disease resistance RPP13-like protein 4
6j5t_F8e-38172517151496Disease resistance RPP13-like protein 4
6j5t_G8e-38172517151496Disease resistance RPP13-like protein 4
6j5t_L8e-38172517151496Disease resistance RPP13-like protein 4
6j5t_O8e-38172517151496Disease resistance RPP13-like protein 4
6j5u_A8e-38172517151496Disease resistance RPP13-like protein 4
6j5v_A8e-38172517151496Disease resistance RPP13-like protein 4
6j5w_A8e-38172517151496Disease resistance RPP13-like protein 4
6j6i_C8e-38172517151496Disease resistance RPP13-like protein 4
6j6i_F8e-38172517151496Disease resistance RPP13-like protein 4
6j6i_G8e-38172517151496Disease resistance RPP13-like protein 4
6j6i_L8e-38172517151496Disease resistance RPP13-like protein 4
6j6i_O8e-38172517151496Disease resistance RPP13-like protein 4
6s2p_N6e-391745233347NRC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196117RRKIIQKRKSKAALSRPWKKLK
2102117KRKSKAALSRPWKKLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.87030.0shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G168400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569723e-70EU956972.1 Zea mays clone 1579149 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462196.20.0disease resistance protein RPP13
RefseqXP_021308277.10.0disease resistance protein RPP13
TrEMBLA0A1W0W4F20.0A0A1W0W4F2_SORBI; Uncharacterized protein
STRINGPavir.Cb00275.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-33bHLH family protein