PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G168400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 1105aa    MW: 124738 Da    PI: 8.4381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G168400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.3e-1110381083655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH    6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55  
                            +++Er RR +i +++ +L+el+P+     +k  +  ++L +Av+YIk+Lq
  Sobic.002G168400.1.p 1038 SIAERERRMKISERIRKLQELVPNM----DKQSNIPDMLDLAVDYIKDLQ 1083
                            689*********************7....5779999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147983.48E-718129No hitNo description
SuperFamilySSF525401.19E-48173442IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009318.7E-47187470IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3008.8E-13187341IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.9E-14208223No hitNo description
PRINTSPR003643.9E-14280294No hitNo description
PRINTSPR003643.9E-14377391No hitNo description
SuperFamilySSF520582.82E-20539908IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.109.0E-14539907IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003643.9E-14679695No hitNo description
PROSITE profilePS514507.227683704IPR001611Leucine-rich repeat
PROSITE profilePS5088814.02410321082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-810361087No hitNo description
SuperFamilySSF474594.45E-1310361096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-1310371095IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-910381088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-710381083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043531Molecular FunctionADP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MEAPTSPLDG PILKLPWKLD KLLRHGFILP KGVEDEIPLI KRDLGEIISI LSNLDDHHAM  60
KVSCWRKEVR ELSYDMEDFV DQYEHATAMS LAGSVPRRKI IQKRKSKAAL SRPWKKLKQR  120
LWMANKIREF SMRTQEALQR HRMYHLDAIA VSGSTTSTRC TCTDACSNSS HSTPCGEENA  180
YVGISAAMEK LQELLLTMHD EGDWRLKVVS IVGLGGIGKT TLANEFYRKL GPQFECRAFV  240
RTSQKPDTRR IFISMLSQIR PHQLPDNWTV HSLISTIRTH LQDKRYLIIV EDICVTTTWD  300
IVKCALPDNN CGSRILTTTE IEDLALASSD HDPKFVYKMQ PLSEDDSRKL FFSSLCGIQH  360
ECPPNLREIS YNVISKCGGL PLAIVTVASI LSSQQGIQDQ LDYVNKSIGY SLLMNPISEG  420
MKQVLDLSYN SLPQNLKACI LYTGLYEEDI IIWKDDLVNQ WIAEGFIEAT EGQDKKEIAR  480
SYFDRLISRK LILPVYINKN GEVLSCVVHR MVLNLVIRYK SIEENFVTPI HNSQATTTLS  540
DKVRRLSLQF GNAEDAIPPT NMRLSQVRTV AFWGVLKCLP TIVQFTLLQV LILHFWGDKD  600
SINFDLNRIS ELFRLRYLKV TSNVTLELGN QMRGLDTLET LTIDARVNAI PSDIVHLPGL  660
LHFSVPPETD LPNGISHMTS LRTLGYFDLS SNSIENVQSL SMLTNLVDLK LTCSTVQVQT  720
EHMYNKMELL LNTVLGRLSS LKSLTLVPRA SSYANSIHDP GTTGMIISGG LCSLLSAPGL  780
LQSLEISPWI YIFLCPPKWI GQLHNLCILK FGVIKIDRDD VNVLRGLPAL AVLSLYVQTK  840
PAERVVIGKT GFPVIKYFRF KCCGPWLKFE EGAMPNLRKL KLAFNACNPV ELITIPVGIR  900
YLSNLKEVSA KIGGASPDES HRKARATELA LRDEIRVHGR CQRVNIQCVK QIIGGKDDQS  960
YITTVEDHVT LKLKQNKIKD EDEENSIEQV EITKDHSRAH QFSLPKTKTS SETAAVAVDK  1020
LLHFHDALPL KTTTHPRSIA ERERRMKISE RIRKLQELVP NMDKQSNIPD MLDLAVDYIK  1080
DLQKQIKALN ESRARCSCSA SKHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-37172517151496Disease resistance RPP13-like protein 4
6j5t_F1e-37172517151496Disease resistance RPP13-like protein 4
6j5t_G1e-37172517151496Disease resistance RPP13-like protein 4
6j5t_L1e-37172517151496Disease resistance RPP13-like protein 4
6j5t_O1e-37172517151496Disease resistance RPP13-like protein 4
6j5u_A1e-37172517151496Disease resistance RPP13-like protein 4
6j5v_A1e-37172517151496Disease resistance RPP13-like protein 4
6j5w_A1e-37172517151496Disease resistance RPP13-like protein 4
6j6i_C1e-37172517151496Disease resistance RPP13-like protein 4
6j6i_F1e-37172517151496Disease resistance RPP13-like protein 4
6j6i_G1e-37172517151496Disease resistance RPP13-like protein 4
6j6i_L1e-37172517151496Disease resistance RPP13-like protein 4
6j6i_O1e-37172517151496Disease resistance RPP13-like protein 4
6s2p_N9e-391745233347NRC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196117RRKIIQKRKSKAALSRPWKKLK
2102117KRKSKAALSRPWKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G168400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569724e-70EU956972.1 Zea mays clone 1579149 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462196.20.0disease resistance protein RPP13
RefseqXP_021308277.10.0disease resistance protein RPP13
TrEMBLA0A1B6QBT50.0A0A1B6QBT5_SORBI; Uncharacterized protein
STRINGSb02g021226.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Representative plantOGRP1207124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-33bHLH family protein