PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G165600.1.p
Common NameSb02g020900, SORBIDRAFT_02g020900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 289aa    MW: 32844.2 Da    PI: 4.5748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G165600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.81.3e-0872110145
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAaka 45 
                           s+y+GVr +  +grW AeIr  +     +k+     ++t eeAa+a
  Sobic.002G165600.1.p  72 SRYRGVRLRD-SGRWQAEIRNpF-----TKKRDYSLHDT-EEAAAA 110
                           79*******9.7*********55.....333344589**.998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-972122IPR016177DNA-binding domain
CDDcd000181.81E-1272120No hitNo description
SMARTSM003809.2E-473136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-973120IPR001471AP2/ERF domain
PROSITE profilePS5103212.82673129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MLRYKKVCIF CCDPDATDSS DDEDDQTSKK EKKIIREVLV PLRKYKTLRP LKAIMPCRIK  60
DLKSPERKVP LSRYRGVRLR DSGRWQAEIR NPFTKKRDYS LHDTEEAAAA TYQAKWFQFH  120
AEMLAIKAQE PVSKHAALSS SSLVSCASSS VLCKQSIQEV QQNGGVSMEI SEDELLHHEP  180
MDQSLLNFST PMETSGHVML NWKDELPFSD SVSPTDEPPL DDLTRLEAMF PVSDFIDATY  240
EPLDDEYIGL ADISHLPLQF KGPEFDLDAE LDWSGFDFVS MESELELL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G165600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462168.10.0ethylene-responsive transcription factor ERF119
RefseqXP_021308493.10.0ethylene-responsive transcription factor ERF119
RefseqXP_021308494.10.0ethylene-responsive transcription factor ERF119
TrEMBLA0A1W0W4E80.0A0A1W0W4E8_SORBI; Uncharacterized protein
STRINGSb02g020900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Representative plantOGRP1310845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-07ERF family protein