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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sobic.002G165300.1.p |
| Common Name | Sb02g020870, SORBIDRAFT_02g020870 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
MYB_related |
| Protein Properties |
Length: 421aa MW: 44997.9 Da PI: 6.2023 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.002G165300.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 34.1 | 6.4e-11 | 371 | 417 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
W E+e l ++v+q+G+g+Wk I + + gRt+ ++k++w++
Sobic.002G165300.1.p 371 WCLLEEETLRQGVEQYGSGNWKDILNNNPdvfIGRTPVDLKDKWRNM 417
55669****************************************96 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0031627 | Biological Process | telomeric loop formation |
| GO:0000783 | Cellular Component | nuclear telomere cap complex |
| GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MPRVTPVGAS LILEHVLADP SVPAAVVTKL LVALPFPSHP TPRLRRAVLL RRLAADPVSE 60
SSLDTLQLLA ALPAPASPIA AAHIAVAAYL AVSASDFDDA AGALFARPNG RARLAVDEGG 120
SPALASDEVM TTVDQFEAAV GNSFSQAVLR GLWGDRSATE ERVRELLAAE WAAIGPSLLV 180
QAAERIVGDG AVETWRAADE ATRAKLRILA GEERTHEILS KLEEPTSSAN PISTPAVEKV 240
INSLKTSCAE LHSVVEDPLP AAKAVADEVL AARTEKSVSL DAEEARGQPT TCGTAGPSAP 300
NDKGKGPSTG KPHSLMDWNP TARTFQWEES PGPESSEPSL RRPHLPSPRR APVSPLPPGE 360
NKNRRRRARK WCLLEEETLR QGVEQYGSGN WKDILNNNPD VFIGRTPVDL KDKWRNMINR 420
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