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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G165080.1.p | ||||||||
Common Name | Sb03g018690, SORBIDRAFT_03g018690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | FAR1 | ||||||||
Protein Properties | Length: 257aa MW: 29177.8 Da PI: 6.8978 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.1 | 1.2e-12 | 106 | 193 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle....le 84 kfY+ YA+evGF ++ ++k +++ C++eg+++ kkk+e + r +++++t+C k+k+k+ + ++k e++ + l Sobic.002G165080.1.p 106 KFYSIYAEEVGFGLCYGNNKP-------YSYIIHCNNEGNNTYFKKKEELRVRDNTSKKTHCMSKMKLKRIYdENKEEIAVVIeyvdLM 187 6**************998655.......58999**************999********************997666555443333339* PP FAR1 85 HnHela 90 HnH+++ Sobic.002G165080.1.p 188 HNHPCF 193 ***976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.0E-7 | 106 | 193 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLSCLSRASW RAQTTELAVG QSHDGAPAAN SEAGTSCRAD RSEDVVAGIS ETKTSSRCRF 60 SQMATVTADE IATSDAEKKY THKEDIDPAL IPRPGMSFRN REEARKFYSI YAEEVGFGLC 120 YGNNKPYSYI IHCNNEGNNT YFKKKEELRV RDNTSKKTHC MSKMKLKRIY DENKEEIAVV 180 IEYVDLMHNH PCFKKKQETI NLSEHKEKDP VFLEFVDDLQ AADVPHHSIQ NIVRDMHGGG 240 EHVPITKRDL ENRQLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G165080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1W0W4I2 | 0.0 | A0A1W0W4I2_SORBI; Uncharacterized protein | ||||
STRING | Sb03g018690.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 | Representative plant | OGRP30 | 12 | 351 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G165080.1.p |
Entrez Gene | 8074941 |