PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G164700.1.p
Common NameSb02g020840, SORBIDRAFT_02g020840
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 371aa    MW: 39806.1 Da    PI: 7.1712
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G164700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05181200120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++C  C+k+F+r  n++ H+
  Sobic.002G164700.1.p 181 FSCAVCNKTFNRFNNMQMHM 200
                           89*****************9 PP
2zf-C2H213.60.00019271293123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y C  Cgk+F  + + ++H +++
  Sobic.002G164700.1.p 271 YACRRCGKRFAVRGDWRTHEKNC 293
                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.36E-5176202No hitNo description
Gene3DG3DSA:3.30.160.604.1E-5181200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055181208IPR007087Zinc finger, C2H2
SMARTSM003550.64181203IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280183203IPR007087Zinc finger, C2H2
SMARTSM00355230234266IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.09E-6257291No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6257291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704271291IPR007087Zinc finger, C2H2
SMARTSM0035558271291IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MHSYRAMHPY THPYQHHTAA VAPTKHGHGH GEEEDDQSML LLSLWPPGQH HGIAAASSAC  60
SSPPICATTT TTTSMAAAAS YPWLTTHQSH YNGGCGGGSS SSSHSSFLFH EHQQQEPDVS  120
ISLSIAPPCS NTAASCGAAA GGFAAPAAPS TVTTVTPGGS QVPSQYWIPS AAEILVGSTQ  180
FSCAVCNKTF NRFNNMQMHM WGHGSQYRKG SESLRGAITV GTAPPASLMR LPCYCCAEGC  240
RNNIEHPRAR PLKDFRTLQT HYRRKHGARP YACRRCGKRF AVRGDWRTHE KNCGKLWFCV  300
CGSDFKHKRS LKDHVRSFGG GHAPHIVESV AVEDDEEDDD DHDDADLHAF DDNVGNGGGA  360
GGEPSDMVVV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.203612e-70root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G164700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679760.0EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460014.10.0zinc finger protein WIP6
SwissprotQ9FX682e-97ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLC5X9190.0C5X919_SORBI; Uncharacterized protein
STRINGSb02g020840.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.12e-97C2H2-like zinc finger protein