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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G162800.1.p | ||||||||
Common Name | Sb02g020760, SORBIDRAFT_02g020760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 160aa MW: 17797.7 Da PI: 9.1949 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.5 | 3.2e-14 | 29 | 76 | 3 | 50 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e++r rrk++NRe+ArrsR+RK++ ++ L+ v +L+ +Nk+L l+ Sobic.002G162800.1.p 29 ERRRKRRKESNRESARRSRLRKQQHLDDLTSQVNQLKDQNKQLSMALS 76 789****************************************96665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-13 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.116 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-11 | 29 | 75 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.6E-11 | 31 | 99 | No hit | No description |
SuperFamily | SSF57959 | 1.0E-11 | 31 | 84 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 4.85E-15 | 38 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MSSGTSSGSS QGTQSSRSED DLDLQAQMER RRKRRKESNR ESARRSRLRK QQHLDDLTSQ 60 VNQLKDQNKQ LSMALSITSQ NLVAVQAQNS VLQTQKMELD SRLGALTEIL WYINSSTSPS 120 TAPADPAMVN SFTTWSSASD ILGANAWNQQ QPIDLYQCF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 35 | RRRKRRK |
2 | 29 | 36 | RRRKRRKE |
3 | 31 | 36 | RKRRKE |
4 | 43 | 49 | RRSRLRK |
5 | 43 | 50 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.3592 | 0.0 | callus| ovary| panicle| root| shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G162800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067053 | 1e-148 | BT067053.1 Zea mays full-length cDNA clone ZM_BFb0173J02 mRNA, complete cds. | |||
GenBank | KJ727558 | 1e-148 | KJ727558.1 Zea mays clone pUT5418 bZIP transcription factor (bZIP9) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460009.1 | 1e-112 | bZIP transcription factor 44 | ||||
TrEMBL | C5X905 | 1e-110 | C5X905_SORBI; Uncharacterized protein | ||||
STRING | Sb02g020760.1 | 1e-111 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 | Representative plant | OGRP10708 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 2e-14 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G162800.1.p |
Entrez Gene | 8064675 |