PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G153100.2.p
Common NameSb02g018870, SORBIDRAFT_02g018870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 410aa    MW: 45255.6 Da    PI: 8.6905
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G153100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.5e-11124153534
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeek 34 
                           k  rr+++NReAAr+sR+RKka+i++Le+ 
  Sobic.002G153100.2.p 124 KTLRRLAQNREAARKSRLRKKAYIQQLETS 153
                           788************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-6120175IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-8121164No hitNo description
PROSITE profilePS502178.829122165IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-7124158No hitNo description
PfamPF001701.4E-8124153IPR004827Basic-leucine zipper domain
PROSITE patternPS000360127142IPR004827Basic-leucine zipper domain
PfamPF141447.9E-28207280IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAEFDQSAIF LYLEDGHDQE QQRQTLNIFP SQPMHVAEPI PAKGVSMGMV TASMLPNGNS  60
SSPKRQEQGG QHRSVAAPAG PVVPLPSNNL AKDNRNSLTK KEETSGGKGA ASAGIVQERV  120
KDPKTLRRLA QNREAARKSR LRKKAYIQQL ETSRIRLSQL EQQVQVARVQ GVFLGTGEQP  180
GFSSAPSPAA VFDVEYGRWV EEHSKLMFQL RAALSEHLAD EQLQSFVNGG MAQHEELLNL  240
KGAMARADVF HLLSGVWVSP AERCFLWLGG FRPSEVIKVM LKHVEPLSEG QILGIYQLQQ  300
LVQEREEALN HSMEATQQNI SDIVAAPDVA PATFMGHMSL AMNKVAAMES FVMQADGLRQ  360
QTLHKLHHIL TTRQAARCLL AIADYFHRLR ALSTLWVARP RQDDGPGLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.89630.0root| shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G153100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459956.10.0transcription factor TGAL7 isoform X2
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA0A1W0W4970.0A0A1W0W497_SORBI; Uncharacterized protein
STRINGSb02g018870.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-120bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]