PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G147400.1.p
Common NameSb02g015770, SORBIDRAFT_02g015770
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 114aa    MW: 11093.6 Da    PI: 8.2673
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G147400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.12.5e-106994127
               G2-like  1 kprlrWtpeLHerFveaveqLGGsekA 27
                          +prl+Wtp+LH+rFv+ v++L G++ A
  Sobic.002G147400.1.p 69 RPRLVWTPQLHKRFVDTVAHL-GIKTA 94
                          59*******************.66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-96894IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MALAQTLITP NLIVAFNIAK HGSGAGGGAV GGARGAGGCP DIDDNGSGGA SSVAGCSGSS  60
DEPAQILKRP RLVWTPQLHK RFVDTVAHLG IKTAHGVDLS VERLLVAGAG AAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G147400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001310197.12e-22uncharacterized protein LOC107548110
TrEMBLC5X7G29e-74C5X7G2_SORBI; Uncharacterized protein
STRINGSb02g015770.12e-74(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.11e-16G2-like family protein