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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G136200.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
BES1 |
Protein Properties |
Length: 597aa MW: 67005.9 Da PI: 4.7543 |
Description |
BES1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G136200.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF822 | 119.5 | 4.6e-37 | 61 | 134 | 3 | 76 |
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76
r++ +E+E++k RER+RRai+ +i+aGLR++Gny l++raD+neV++AL+reAGwvv +DGtt++ +s+
Sobic.002G136200.2.p 61 PNRRRAREEKERTKMRERQRRAITGRILAGLRQHGNYSLRARADINEVIAALAREAGWVVLPDGTTFPSSSSSS 134
5799999*************************************************************877765 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF05687 | 1.0E-33 | 62 | 136 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 4.7E-191 | 153 | 592 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 5.0E-208 | 156 | 590 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 8.2E-116 | 162 | 579 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-77 | 193 | 207 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-77 | 214 | 232 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-77 | 236 | 257 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 240 | 248 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 1.3E-8 | 319 | 328 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 1.4E-77 | 329 | 351 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-77 | 402 | 421 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-77 | 436 | 452 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-77 | 453 | 464 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.4E-77 | 471 | 494 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 1.3E-8 | 474 | 484 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 1.4E-77 | 511 | 533 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 1.3E-8 | 562 | 576 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 1.3E-8 | 577 | 591 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Sequence ? help Back to Top |
Protein Sequence Length: 597 aa
Download sequence Send
to blast |
MQQAGPADDD EDEEMGVKEE EEDGDEEEED DDGYYMDPRS PAAATVVSTP GGGGGRAGGT 60 PNRRRAREEK ERTKMRERQR RAITGRILAG LRQHGNYSLR ARADINEVIA ALAREAGWVV 120 LPDGTTFPSS SSSSAAVAAQ VPDVAPRPPE RDFAGTPYVP VYVMLPLGVV NGNGEVVDAD 180 ELVGQLRVLK AAGVDGVMVD CWWGNVEAHR PQEYNWTGYR RLFQMIRELK LKLQVVMSFH 240 ECGGNVGDDI SIPLPHWVIE IGRSNPDIYF TDRAGRRNTE CLSWGIDKER VLQGRTAVEV 300 YFDFMRSFRV EFDEYFEDGI ISEIEIGLGA CGELRYPSYP AKHGWKYPGI GEFQCYDRYL 360 QKSLRKAAEA RGHTIWARGP DNAGHYNSEP NLTGFFCDGG DYDSYYGRFF LSWYSQTLVD 420 HADRVLMLAR LAFEGSNIAV KVSGVHWWYK TASHAAELTA GFYNPCNRDG YAPIAAVLKK 480 YDAALNFTCV ELRTMDQHEV YPEAFADPEG LVWQVLNAAW DAGIQVASEN ALPCYDRDGF 540 NKILENAKPL NDPDGRHLFG FTYLRLSNVL FERPNFFEFE RFVKRMHGEA VLDLQV*
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Functional Description ? help
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Source |
Description |
UniProt | Low beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Slightly by cold stress. {ECO:0000269|PubMed:16297066}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU956905 | 0.0 | EU956905.1 Zea mays clone 1577050 beta-amylase mRNA, complete cds. |
Publications
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- Smith AM,Zeeman SC,Smith SM
Starch degradation. Annu Rev Plant Biol, 2005. 56: p. 73-98 [PMID:15862090] - Lundmark M,Cavaco AM,Trevanion S,Hurry V
Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant Cell Environ., 2006. 29(9): p. 1703-14 [PMID:16913860] - Li J, et al.
Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein. Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8 [PMID:19664588] - Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM
Starch turnover in developing oilseed embryos. New Phytol., 2010. 187(3): p. 791-804 [PMID:20546137] - Monroe JD, et al.
Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics. Plant Physiol., 2017. 175(4): p. 1525-1535 [PMID:29066669]
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