PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G128400.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 276aa    MW: 29095.9 Da    PI: 6.1562
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G128400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.35e-2674132259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D y+WrKYGqKe+ g++fprsYY+C  + gCp+kk+v++++ dp+ +e+tY + H+++
  Sobic.002G128400.2.p  74 HDSYTWRKYGQKEILGARFPRSYYKCGRRpGCPAKKHVQQCDADPSKLEVTYLEAHTCD 132
                           7**************************999***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-2672134IPR003657WRKY domain
SMARTSM007743.9E-3173133IPR003657WRKY domain
SuperFamilySSF1182901.83E-2373134IPR003657WRKY domain
PROSITE profilePS5081121.59775134IPR003657WRKY domain
PfamPF031064.1E-2475132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MAPVQSALAA TWTPSCRTSL IHCVKRSLLC GSAPVGSQRP PASPPTGAQP VPAAGDQQRQ  60
GELLNGPVLQ NGVHDSYTWR KYGQKEILGA RFPRSYYKCG RRPGCPAKKH VQQCDADPSK  120
LEVTYLEAHT CDDPPPSSSH AVPDPTAGSD ALLVPPVPTV PFPSAQCYGG GRPSPPPLPP  180
YQVPYAATTL GSNVLTLTAT GVLLPSASYD PVPDVTDCTP SLEQEQDHDL LHIPSPACSQ  240
SELLPMEAAK LSPHAHGLPL SLEHTLDCDF AVPEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-15671371280Disease resistance protein RRS1
5w3x_D6e-15671371280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G128400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4285500.0DQ428550.1 Sorghum bicolor voucher BTx623 locus PRC1162 genomic sequence.
GenBankDQ4285510.0DQ428551.1 Sorghum bicolor voucher NSL50875 locus PRC1162 genomic sequence.
GenBankDQ4285520.0DQ428552.1 Sorghum bicolor voucher NSL51030 locus PRC1162 genomic sequence.
GenBankDQ4285610.0DQ428561.1 Sorghum bicolor voucher NSL92371 locus PRC1162 genomic sequence.
GenBankDQ4285620.0DQ428562.1 Sorghum bicolor voucher PI152702 locus PRC1162 genomic sequence.
GenBankDQ4285640.0DQ428564.1 Sorghum bicolor voucher PI267408 locus PRC1162 genomic sequence.
GenBankDQ4285660.0DQ428566.1 Sorghum bicolor voucher PI585454 locus PRC1162 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459807.11e-149WRKY transcription factor 6
TrEMBLA0A1W0W3R30.0A0A1W0W3R3_SORBI; Uncharacterized protein
STRINGSb02g011050.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-21WRKY DNA-binding protein 55