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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G128400.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 276aa MW: 29095.9 Da PI: 6.1562 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G128400.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 82.3 | 5e-26 | 74 | 132 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D y+WrKYGqKe+ g++fprsYY+C + gCp+kk+v++++ dp+ +e+tY + H+++
Sobic.002G128400.2.p 74 HDSYTWRKYGQKEILGARFPRSYYKCGRRpGCPAKKHVQQCDADPSKLEVTYLEAHTCD 132
7**************************999***************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MAPVQSALAA TWTPSCRTSL IHCVKRSLLC GSAPVGSQRP PASPPTGAQP VPAAGDQQRQ 60 GELLNGPVLQ NGVHDSYTWR KYGQKEILGA RFPRSYYKCG RRPGCPAKKH VQQCDADPSK 120 LEVTYLEAHT CDDPPPSSSH AVPDPTAGSD ALLVPPVPTV PFPSAQCYGG GRPSPPPLPP 180 YQVPYAATTL GSNVLTLTAT GVLLPSASYD PVPDVTDCTP SLEQEQDHDL LHIPSPACSQ 240 SELLPMEAAK LSPHAHGLPL SLEHTLDCDF AVPEL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ428550 | 0.0 | DQ428550.1 Sorghum bicolor voucher BTx623 locus PRC1162 genomic sequence. |
GenBank | DQ428551 | 0.0 | DQ428551.1 Sorghum bicolor voucher NSL50875 locus PRC1162 genomic sequence. |
GenBank | DQ428552 | 0.0 | DQ428552.1 Sorghum bicolor voucher NSL51030 locus PRC1162 genomic sequence. |
GenBank | DQ428561 | 0.0 | DQ428561.1 Sorghum bicolor voucher NSL92371 locus PRC1162 genomic sequence. |
GenBank | DQ428562 | 0.0 | DQ428562.1 Sorghum bicolor voucher PI152702 locus PRC1162 genomic sequence. |
GenBank | DQ428564 | 0.0 | DQ428564.1 Sorghum bicolor voucher PI267408 locus PRC1162 genomic sequence. |
GenBank | DQ428566 | 0.0 | DQ428566.1 Sorghum bicolor voucher PI585454 locus PRC1162 genomic sequence. |