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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G128400.1.p |
Common Name | Sb02g011050, SORBIDRAFT_02g011050 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 217aa MW: 23160.1 Da PI: 5.1921 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G128400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 82.9 | 3.2e-26 | 15 | 73 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D y+WrKYGqKe+ g++fprsYY+C + gCp+kk+v++++ dp+ +e+tY + H+++
Sobic.002G128400.1.p 15 HDSYTWRKYGQKEILGARFPRSYYKCGRRpGCPAKKHVQQCDADPSKLEVTYLEAHTCD 73
7**************************999***************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MDAASRMTVL QNGVHDSYTW RKYGQKEILG ARFPRSYYKC GRRPGCPAKK HVQQCDADPS 60 KLEVTYLEAH TCDDPPPSSS HAVPDPTAGS DALLVPPVPT VPFPSAQCYG GGRPSPPPLP 120 PYQVPYAATT LGSNVLTLTA TGVLLPSASY DPVPDVTDCT PSLEQEQDHD LLHIPSPACS 180 QSELLPMEAA KLSPHAHGLP LSLEHTLDCD FAVPEL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ428550 | 0.0 | DQ428550.1 Sorghum bicolor voucher BTx623 locus PRC1162 genomic sequence. |
GenBank | DQ428551 | 0.0 | DQ428551.1 Sorghum bicolor voucher NSL50875 locus PRC1162 genomic sequence. |
GenBank | DQ428552 | 0.0 | DQ428552.1 Sorghum bicolor voucher NSL51030 locus PRC1162 genomic sequence. |
GenBank | DQ428561 | 0.0 | DQ428561.1 Sorghum bicolor voucher NSL92371 locus PRC1162 genomic sequence. |
GenBank | DQ428562 | 0.0 | DQ428562.1 Sorghum bicolor voucher PI152702 locus PRC1162 genomic sequence. |
GenBank | DQ428564 | 0.0 | DQ428564.1 Sorghum bicolor voucher PI267408 locus PRC1162 genomic sequence. |
GenBank | DQ428566 | 0.0 | DQ428566.1 Sorghum bicolor voucher PI585454 locus PRC1162 genomic sequence. |