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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.002G114200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 246aa MW: 26989.7 Da PI: 9.9626 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.002G114200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 25.4 | 3.8e-08 | 3 | 122 | 2 | 108 |
GAGA_bind 2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdakirernlalsekkaav...aerdmaflqrdkalae.rnkalverdnkllal 84
dddgs rn+g+y+ k nlglq+mss++ +rd+k n a+ ++++ + ++ m+ ++ + +a ++ + ++k+l+
Sobic.002G114200.1.p 3 DDDGSLGtRNWGFYDTV---KGNLGLQVMSSVPpDRDTKSLLPNGAFLQHHGHHnapHQLHMQQ-HSQHSVAPlVLHHQRPPEQKVLHS 87
45566667******987...************99******777766665555442114444544.344455552334445556777777 PP
GAGA_bind 85 llvensla...........salpvgvqvlsgtksi 108
++ + + +p++++++s+++++
Sobic.002G114200.1.p 88 RPIGPAGHvghpghgghivHYHPTSYGMISDAQHT 122
76666555555666666666666666666665554 PP
|
| 2 | GAGA_bind | 243.2 | 1.8e-74 | 129 | 245 | 185 | 301 |
GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
+ + +kk++++v+ng++lD +++P+ vCsCtGa++qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRi+grKmSqgafkk+LekLa
Sobic.002G114200.1.p 129 SLERGSKKTVGMVINGIELDLANIPTLVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARISGRKMSQGAFKKVLEKLA 217
557999*********************************************************************************** PP
GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
+eGy+l+np+DLk++WAkH tnkfvtir
Sobic.002G114200.1.p 218 GEGYNLANPIDLKTFWAKHRTNKFVTIR 245
***************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MDDDDGSLGT RNWGFYDTVK GNLGLQVMSS VPPDRDTKSL LPNGAFLQHH GHHNAPHQLH 60
MQQHSQHSVA PLVLHHQRPP EQKVLHSRPI GPAGHVGHPG HGGHIVHYHP TSYGMISDAQ 120
HTLQMMQPSL ERGSKKTVGM VINGIELDLA NIPTLVCSCT GAPQQCYRWG AGGWQSACCT 180
TSISTYPLPM NTKRRGARIS GRKMSQGAFK KVLEKLAGEG YNLANPIDLK TFWAKHRTNK 240
FVTIR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT054267 | 1e-139 | BT054267.1 Zea mays full-length cDNA clone ZM_BFb0206F22 mRNA, complete cds. |
| GenBank | BT064015 | 1e-139 | BT064015.1 Zea mays full-length cDNA clone ZM_BFc0131I22 mRNA, complete cds. |
