PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G112850.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 749aa    MW: 87029.1 Da    PI: 5.4968
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G112850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1478.6e-15134230190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                           ++Yn+YAk++GFs+r+++s++s  ++e  k +fvC+keg+ ++++            +++ + ++e+  + +   +v+k+  +kw+v+ 
  Sobic.002G112850.1.p 134 EYYNSYAKRTGFSIRTNTSRRSAITREKQKVQFVCNKEGFGRKRRVVvqlvdgitcYSDNDEAEEEDTAQEEEDEQVEKR--KKWQVIY 220
                           69****************************************99988999999987333333333444444444556666..9****** PP

                  FAR1  81 leleHnHela 90 
                           +  eHnH+l+
  Sobic.002G112850.1.p 221 FLAEHNHDLV 230
                           *******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-12134230IPR004330FAR1 DNA binding domain
PfamPF105511.2E-30353446IPR018289MULE transposase domain
PROSITE profilePS509669.532577613IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-4585609IPR007527Zinc finger, SWIM-type
SMARTSM005750.0075588615IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MDLNKLPPGL DEDFLDAFDF DYMTSNPTFC TQVSTNPEIP QPNDEHVNQQ ILPSISEDGH  60
AGLAETDPAV SEEFLPTISE IRLSFEQTRI EVRNEDSTTN PVVAEVAEEE EEVWSTPEMP  120
HNGMSFATLD EAREYYNSYA KRTGFSIRTN TSRRSAITRE KQKVQFVCNK EGFGRKRRVV  180
VQLVDGITCY SDNDEAEEED TAQEEEDEQV EKRKKWQVIY FLAEHNHDLV VQPSLKKFLR  240
SHRGIPKQEK DFIVLLHGCN LSTGRIMQLM SEFYGSAQLV PYDGKQVSNF RSTIHKTEKF  300
KDMQETLDYF RALKEEDPEF FYKIKLDDNH RVENLFWVDS ATRCAYKEAY NDCVSFDATY  360
MTNIYEMPCT PFIGINRHCQ TFQLGCAFIR NEKTTTYEWL FLTFLEAMDR KAPLNIITDQ  420
DPAMRDAICI VFPNTTHRNC RWHIMDKFSG TIGPILAKND ELNEEFKYGL EDNEHFQHLY  480
HIRQSFIPAY YMHSFFPFLQ STQRSEGFNA LLKKYVNPNL SVLQFVRQYQ KIQEKCLVAQ  540
DGQDFRTDEN ERRRWSRHPL EKHASTVYTK NMFYRNYLVT AIEEDESYCC ECSKFDRDGI  600
ICYHIMRVMV RMGVELIPER YILKRWTQQA IASDTNQVQN LNAPVGLVAR GMPLTSEKTL  660
RLTNATTAFV AIAVEGCTND ENYAILEKHI KEMRSEFEEI KKRTMANRQN TSGAKGGATE  720
GAQNGTEKTV AEKVLVSKKY AYKLRNISK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G112850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1W0W3C70.0A0A1W0W3C7_SORBI; Uncharacterized protein (Fragment)
STRINGSb05g008130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1361125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-81FAR1-related sequence 5