PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G104400.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 1233aa MW: 138007 Da PI: 6.7555 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 47.3 | 4e-15 | 1087 | 1146 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dD +W K+G K++ g f+rsYYrC + gC+++k ++ +++d +++ ++Y +eHnh Sobic.002G104400.4.p 1087 DDDSKWEKFGEKNIFGYIFARSYYRCIWRnltGCSATKILQPDNNDANTLFVMYISEHNH 1146 8999**********************9887889*************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52058 | 6.69E-29 | 145 | 315 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.1E-26 | 147 | 316 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00367 | 110 | 170 | 190 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 28 | 218 | 245 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 520 | 266 | 290 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SuperFamily | SSF52540 | 1.37E-38 | 349 | 589 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 2.9E-5 | 354 | 485 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 3.5E-11 | 369 | 384 | No hit | No description |
Pfam | PF00931 | 2.7E-35 | 371 | 615 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 3.5E-11 | 439 | 453 | No hit | No description |
PRINTS | PR00364 | 3.5E-11 | 536 | 550 | No hit | No description |
SuperFamily | SSF52058 | 4.25E-30 | 640 | 793 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.1E-11 | 646 | 758 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 3.5E-11 | 700 | 716 | No hit | No description |
SuperFamily | SSF52058 | 4.25E-30 | 835 | 1031 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 4.1E-11 | 836 | 1042 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00367 | 65 | 950 | 979 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Gene3D | G3DSA:2.20.25.80 | 5.0E-16 | 1075 | 1147 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-16 | 1080 | 1148 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.35 | 1081 | 1149 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-13 | 1086 | 1148 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-14 | 1087 | 1146 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1233 aa Download sequence Send to blast |
MMLAKLGVGV GTHLEKVMPK VSGTRSKTTA ISFMHLLASQ ELVILPVTDK LEGLRHGSPG 60 LSGVVLGNYS DMLSLSSSVI RCILLCRGIL GIINMVNMEG KDKSLELPVF AFDDLTYAGL 120 NKGIGMNAHS VPARMTDPIY LLPMFTRSLL CLDLSSYSGL TQLPPSIGNL SNLAALNLSH 180 CYSLQTLTVS IGSLKNLQTL VLSCCHELRN LPVSLCELSK LRLLDLAGCS SLENLPASLV 240 NLGNLENLNL SYCKELKELP QPFGNLQELK YLNLSGSHRV DLDVECLCTL ANLKSLTLSP 300 LTNIQGFPDS FKDLANRLDS LRWWKKNQIH PQCGPKAASL QSYRCYEQSI IDMLLSDEAD 360 NSSDQIVTSA CIVGESGMGK TELVHQIYNN RMIFDTFDLR IWLNMCDKKR LLGKIVELTT 420 CASCSDASIS VLEEIVIEEL TSKRLLLVLD DSEIKSQYFW GYIRKLLNVC AKGSAVIVTT 480 KSKEVANQIG AMQTFYLSPL SKEECFMIFK EHVLEDLAMN NYCQLESIGW KFVEKCGGNP 540 MCIKVLSGLL CHSEIGLSEI DMIVDGILPA LRLCYDLLPA HLQQCFKFCS LFPKDYIFVK 600 HHIIRLWIAE GFVFCEEDFK TAALSNEVRN LQSFLVVRRC LPVVRIFTLD DIFVKHRFLR 660 ALNLSYTDIL ELPISIGNMK HLRLLALNNT KIKSLPIEIG QVNSLQTLEL KDCCHLIDLP 720 GSTSSLAKLR HLDVQKEWGN VNVGMPHGIG YLTDLQTLTT FNIGNDLLHC SISELKNLNG 780 LSGHVHVTGL ENIKTANDAR EANMMGKHLL EALTLEWSYQ EEGMDDDMGK EIANEILQHL 840 QPNSNIMELV IQNYAGNLFP VWMQDNYLCK LISVTLDNCH GCSELPYLGD LPSLKSLFIQ 900 RINGVERFGI ETSSLATEEK HPTGFPSLEV LNICEMYDLQ FWVSMREGDF PRLFRLSISR 960 CPKLTNLPRL ISLVHVSFYY GVELPTFSEL PSLESLKIEG FQKIRSINFP HHLTTLKKLE 1020 IIDCKELLSV YAHSLSVSDL KVVRCLKLDL VGSSTEDHIG QKVVNGRNSL TRRPMVLKTL 1080 TYTNVLDDDS KWEKFGEKNI FGYIFARSYY RCIWRNLTGC SATKILQPDN NDANTLFVMY 1140 ISEHNHGFSN EPHLELQSQL GTGRKRKEYD VSSDENTSRK QLHDSSVSAA SSVPRPATGE 1200 ATPSSAEELK AKKMGRPRKP NPRVFGPEWS IA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j5t_C | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j5t_F | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j5t_G | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j5t_L | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j5t_O | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j5u_A | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j5v_A | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j5w_A | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j6i_C | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j6i_F | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j6i_G | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j6i_L | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
6j6i_O | 7e-27 | 362 | 868 | 177 | 763 | Disease resistance RPP13-like protein 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G104400.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459691.2 | 0.0 | uncharacterized protein LOC8057272 | ||||
TrEMBL | A0A1W0W378 | 0.0 | A0A1W0W378_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G382273_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45260.1 | 2e-12 | Disease resistance protein (TIR-NBS-LRR class) |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G104400.4.p |