PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G104400.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 1233aa    MW: 138007 Da    PI: 6.7555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G104400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY47.34e-1510871146258
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                            dD  +W K+G K++ g  f+rsYYrC  +   gC+++k ++ +++d +++ ++Y +eHnh
  Sobic.002G104400.4.p 1087 DDDSKWEKFGEKNIFGYIFARSYYRCIWRnltGCSATKILQPDNNDANTLFVMYISEHNH 1146
                            8999**********************9887889*************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520586.69E-29145315IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-26147316IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00367110170190IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036728218245IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367520266290IPR006553Leucine-rich repeat, cysteine-containing subtype
SuperFamilySSF525401.37E-38349589IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.9E-5354485IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.5E-11369384No hitNo description
PfamPF009312.7E-35371615IPR002182NB-ARC
PRINTSPR003643.5E-11439453No hitNo description
PRINTSPR003643.5E-11536550No hitNo description
SuperFamilySSF520584.25E-30640793IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-11646758IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003643.5E-11700716No hitNo description
SuperFamilySSF520584.25E-308351031IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.1E-118361042IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036765950979IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene3DG3DSA:2.20.25.805.0E-1610751147IPR003657WRKY domain
SuperFamilySSF1182901.7E-1610801148IPR003657WRKY domain
PROSITE profilePS5081117.3510811149IPR003657WRKY domain
SMARTSM007746.2E-1310861148IPR003657WRKY domain
PfamPF031067.0E-1410871146IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1233 aa     Download sequence    Send to blast
MMLAKLGVGV GTHLEKVMPK VSGTRSKTTA ISFMHLLASQ ELVILPVTDK LEGLRHGSPG  60
LSGVVLGNYS DMLSLSSSVI RCILLCRGIL GIINMVNMEG KDKSLELPVF AFDDLTYAGL  120
NKGIGMNAHS VPARMTDPIY LLPMFTRSLL CLDLSSYSGL TQLPPSIGNL SNLAALNLSH  180
CYSLQTLTVS IGSLKNLQTL VLSCCHELRN LPVSLCELSK LRLLDLAGCS SLENLPASLV  240
NLGNLENLNL SYCKELKELP QPFGNLQELK YLNLSGSHRV DLDVECLCTL ANLKSLTLSP  300
LTNIQGFPDS FKDLANRLDS LRWWKKNQIH PQCGPKAASL QSYRCYEQSI IDMLLSDEAD  360
NSSDQIVTSA CIVGESGMGK TELVHQIYNN RMIFDTFDLR IWLNMCDKKR LLGKIVELTT  420
CASCSDASIS VLEEIVIEEL TSKRLLLVLD DSEIKSQYFW GYIRKLLNVC AKGSAVIVTT  480
KSKEVANQIG AMQTFYLSPL SKEECFMIFK EHVLEDLAMN NYCQLESIGW KFVEKCGGNP  540
MCIKVLSGLL CHSEIGLSEI DMIVDGILPA LRLCYDLLPA HLQQCFKFCS LFPKDYIFVK  600
HHIIRLWIAE GFVFCEEDFK TAALSNEVRN LQSFLVVRRC LPVVRIFTLD DIFVKHRFLR  660
ALNLSYTDIL ELPISIGNMK HLRLLALNNT KIKSLPIEIG QVNSLQTLEL KDCCHLIDLP  720
GSTSSLAKLR HLDVQKEWGN VNVGMPHGIG YLTDLQTLTT FNIGNDLLHC SISELKNLNG  780
LSGHVHVTGL ENIKTANDAR EANMMGKHLL EALTLEWSYQ EEGMDDDMGK EIANEILQHL  840
QPNSNIMELV IQNYAGNLFP VWMQDNYLCK LISVTLDNCH GCSELPYLGD LPSLKSLFIQ  900
RINGVERFGI ETSSLATEEK HPTGFPSLEV LNICEMYDLQ FWVSMREGDF PRLFRLSISR  960
CPKLTNLPRL ISLVHVSFYY GVELPTFSEL PSLESLKIEG FQKIRSINFP HHLTTLKKLE  1020
IIDCKELLSV YAHSLSVSDL KVVRCLKLDL VGSSTEDHIG QKVVNGRNSL TRRPMVLKTL  1080
TYTNVLDDDS KWEKFGEKNI FGYIFARSYY RCIWRNLTGC SATKILQPDN NDANTLFVMY  1140
ISEHNHGFSN EPHLELQSQL GTGRKRKEYD VSSDENTSRK QLHDSSVSAA SSVPRPATGE  1200
ATPSSAEELK AKKMGRPRKP NPRVFGPEWS IA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C7e-27362868177763Disease resistance RPP13-like protein 4
6j5t_F7e-27362868177763Disease resistance RPP13-like protein 4
6j5t_G7e-27362868177763Disease resistance RPP13-like protein 4
6j5t_L7e-27362868177763Disease resistance RPP13-like protein 4
6j5t_O7e-27362868177763Disease resistance RPP13-like protein 4
6j5u_A7e-27362868177763Disease resistance RPP13-like protein 4
6j5v_A7e-27362868177763Disease resistance RPP13-like protein 4
6j5w_A7e-27362868177763Disease resistance RPP13-like protein 4
6j6i_C7e-27362868177763Disease resistance RPP13-like protein 4
6j6i_F7e-27362868177763Disease resistance RPP13-like protein 4
6j6i_G7e-27362868177763Disease resistance RPP13-like protein 4
6j6i_L7e-27362868177763Disease resistance RPP13-like protein 4
6j6i_O7e-27362868177763Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G104400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459691.20.0uncharacterized protein LOC8057272
TrEMBLA0A1W0W3780.0A0A1W0W378_SORBI; Uncharacterized protein
STRINGGRMZM2G382273_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.12e-12Disease resistance protein (TIR-NBS-LRR class)