PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G104400.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 1307aa    MW: 146657 Da    PI: 6.6543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G104400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY47.24.3e-1511611220258
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58  
                            dD  +W K+G K++ g  f+rsYYrC  +   gC+++k ++ +++d +++ ++Y +eHnh
  Sobic.002G104400.3.p 1161 DDDSKWEKFGEKNIFGYIFARSYYRCIWRnltGCSATKILQPDNNDANTLFVMYISEHNH 1220
                            8999**********************9887889*************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520586.89E-29145315IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.8E-29147319IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00367110170190IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036728218245IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367520266290IPR006553Leucine-rich repeat, cysteine-containing subtype
SuperFamilySSF525401.49E-38349589IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.1E-5354485IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003644.4E-11369384No hitNo description
PfamPF009312.8E-35371616IPR002182NB-ARC
PRINTSPR003644.4E-11439453No hitNo description
PRINTSPR003644.4E-11536550No hitNo description
SuperFamilySSF520585.61E-33652867IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.0E-12687848IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003644.4E-11774790No hitNo description
SuperFamilySSF520585.61E-339091105IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.0E-119111116IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003676510241053IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene3DG3DSA:2.20.25.805.3E-1611491221IPR003657WRKY domain
SuperFamilySSF1182901.83E-1611541222IPR003657WRKY domain
PROSITE profilePS5081117.3511551223IPR003657WRKY domain
SMARTSM007746.2E-1311601222IPR003657WRKY domain
PfamPF031067.5E-1411611220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1307 aa     Download sequence    Send to blast
MMLAKLGVGV GTHLEKVMPK VSGTRSKTTA ISFMHLLASQ ELVILPVTDK LEGLRHGSPG  60
LSGVVLGNYS DMLSLSSSVI RCILLCRGIL GIINMVNMEG KDKSLELPVF AFDDLTYAGL  120
NKGIGMNAHS VPARMTDPIY LLPMFTRSLL CLDLSSYSGL TQLPPSIGNL SNLAALNLSH  180
CYSLQTLTVS IGSLKNLQTL VLSCCHELRN LPVSLCELSK LRLLDLAGCS SLENLPASLV  240
NLGNLENLNL SYCKELKELP QPFGNLQELK YLNLSGSHRV DLDVECLCTL ANLKSLTLSP  300
LTNIQGFPDS FKDLANRLDS LRWWKKNQIH PQCGPKAASL QSYRCYEQSI IDMLLSDEAD  360
NSSDQIVTSA CIVGESGMGK TELVHQIYNN RMIFDTFDLR IWLNMCDKKR LLGKIVELTT  420
CASCSDASIS VLEEIVIEEL TSKRLLLVLD DSEIKSQYFW GYIRKLLNVC AKGSAVIVTT  480
KSKEVANQIG AMQTFYLSPL SKEECFMIFK EHVLEDLAMN NYCQLESIGW KFVEKCGGNP  540
MCIKVLSGLL CHSEIGLSEI DMIVDGILPA LRLCYDLLPA HLQQCFKFCS LFPKDYIFVK  600
HHIIRLWIAE GFVFCEEGTK PEDTALHYFD QLFCRSFFQR SPFHSDHKDS FVMHELFHDL  660
AHSVSKNECF RCEEPFCSFA ENVSHLSLVL SDFKTAALSN EVRNLQSFLV VRRCLPVVRI  720
FTLDDIFVKH RFLRALNLSY TDILELPISI GNMKHLRLLA LNNTKIKSLP IEIGQVNSLQ  780
TLELKDCCHL IDLPGSTSSL AKLRHLDVQK EWGNVNVGMP HGIGYLTDLQ TLTTFNIGND  840
LLHCSISELK NLNGLSGHVH VTGLENIKTA NDAREANMMG KHLLEALTLE WSYQEEGMDD  900
DMGKEIANEI LQHLQPNSNI MELVIQNYAG NLFPVWMQDN YLCKLISVTL DNCHGCSELP  960
YLGDLPSLKS LFIQRINGVE RFGIETSSLA TEEKHPTGFP SLEVLNICEM YDLQFWVSMR  1020
EGDFPRLFRL SISRCPKLTN LPRLISLVHV SFYYGVELPT FSELPSLESL KIEGFQKIRS  1080
INFPHHLTTL KKLEIIDCKE LLSVYAHSLS VSDLKVVRCL KLDLVGSSTE DHIGQKVVNG  1140
RNSLTRRPMV LKTLTYTNVL DDDSKWEKFG EKNIFGYIFA RSYYRCIWRN LTGCSATKIL  1200
QPDNNDANTL FVMYISEHNH GFSNEPHLEL QSQLGTGRKR KEYDVSSDEN TSRKQLHDSS  1260
VSAASSVPRP ATGEATPSSA EELKAKKMGR PRKPNPRVFG PEWSIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C5e-383621060177847Disease resistance RPP13-like protein 4
6j5t_F5e-383621060177847Disease resistance RPP13-like protein 4
6j5t_G5e-383621060177847Disease resistance RPP13-like protein 4
6j5t_L5e-383621060177847Disease resistance RPP13-like protein 4
6j5t_O5e-383621060177847Disease resistance RPP13-like protein 4
6j5u_A5e-383621060177847Disease resistance RPP13-like protein 4
6j5v_A5e-383621060177847Disease resistance RPP13-like protein 4
6j5w_A5e-383621060177847Disease resistance RPP13-like protein 4
6j6i_C5e-383621060177847Disease resistance RPP13-like protein 4
6j6i_F5e-383621060177847Disease resistance RPP13-like protein 4
6j6i_G5e-383621060177847Disease resistance RPP13-like protein 4
6j6i_L5e-383621060177847Disease resistance RPP13-like protein 4
6j6i_O5e-383621060177847Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G104400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459691.20.0uncharacterized protein LOC8057272
TrEMBLA0A1B6QAD60.0A0A1B6QAD6_SORBI; Uncharacterized protein
STRINGGRMZM2G382273_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.13e-12Disease resistance protein (TIR-NBS-LRR class)