PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G104400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 1307aa MW: 146657 Da PI: 6.6543 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 47.2 | 4.3e-15 | 1161 | 1220 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dD +W K+G K++ g f+rsYYrC + gC+++k ++ +++d +++ ++Y +eHnh Sobic.002G104400.3.p 1161 DDDSKWEKFGEKNIFGYIFARSYYRCIWRnltGCSATKILQPDNNDANTLFVMYISEHNH 1220 8999**********************9887889*************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52058 | 6.89E-29 | 145 | 315 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 2.8E-29 | 147 | 319 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00367 | 110 | 170 | 190 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 28 | 218 | 245 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 520 | 266 | 290 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SuperFamily | SSF52540 | 1.49E-38 | 349 | 589 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 3.1E-5 | 354 | 485 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 4.4E-11 | 369 | 384 | No hit | No description |
Pfam | PF00931 | 2.8E-35 | 371 | 616 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 4.4E-11 | 439 | 453 | No hit | No description |
PRINTS | PR00364 | 4.4E-11 | 536 | 550 | No hit | No description |
SuperFamily | SSF52058 | 5.61E-33 | 652 | 867 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 6.0E-12 | 687 | 848 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 4.4E-11 | 774 | 790 | No hit | No description |
SuperFamily | SSF52058 | 5.61E-33 | 909 | 1105 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 5.0E-11 | 911 | 1116 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00367 | 65 | 1024 | 1053 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Gene3D | G3DSA:2.20.25.80 | 5.3E-16 | 1149 | 1221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-16 | 1154 | 1222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.35 | 1155 | 1223 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-13 | 1160 | 1222 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-14 | 1161 | 1220 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1307 aa Download sequence Send to blast |
MMLAKLGVGV GTHLEKVMPK VSGTRSKTTA ISFMHLLASQ ELVILPVTDK LEGLRHGSPG 60 LSGVVLGNYS DMLSLSSSVI RCILLCRGIL GIINMVNMEG KDKSLELPVF AFDDLTYAGL 120 NKGIGMNAHS VPARMTDPIY LLPMFTRSLL CLDLSSYSGL TQLPPSIGNL SNLAALNLSH 180 CYSLQTLTVS IGSLKNLQTL VLSCCHELRN LPVSLCELSK LRLLDLAGCS SLENLPASLV 240 NLGNLENLNL SYCKELKELP QPFGNLQELK YLNLSGSHRV DLDVECLCTL ANLKSLTLSP 300 LTNIQGFPDS FKDLANRLDS LRWWKKNQIH PQCGPKAASL QSYRCYEQSI IDMLLSDEAD 360 NSSDQIVTSA CIVGESGMGK TELVHQIYNN RMIFDTFDLR IWLNMCDKKR LLGKIVELTT 420 CASCSDASIS VLEEIVIEEL TSKRLLLVLD DSEIKSQYFW GYIRKLLNVC AKGSAVIVTT 480 KSKEVANQIG AMQTFYLSPL SKEECFMIFK EHVLEDLAMN NYCQLESIGW KFVEKCGGNP 540 MCIKVLSGLL CHSEIGLSEI DMIVDGILPA LRLCYDLLPA HLQQCFKFCS LFPKDYIFVK 600 HHIIRLWIAE GFVFCEEGTK PEDTALHYFD QLFCRSFFQR SPFHSDHKDS FVMHELFHDL 660 AHSVSKNECF RCEEPFCSFA ENVSHLSLVL SDFKTAALSN EVRNLQSFLV VRRCLPVVRI 720 FTLDDIFVKH RFLRALNLSY TDILELPISI GNMKHLRLLA LNNTKIKSLP IEIGQVNSLQ 780 TLELKDCCHL IDLPGSTSSL AKLRHLDVQK EWGNVNVGMP HGIGYLTDLQ TLTTFNIGND 840 LLHCSISELK NLNGLSGHVH VTGLENIKTA NDAREANMMG KHLLEALTLE WSYQEEGMDD 900 DMGKEIANEI LQHLQPNSNI MELVIQNYAG NLFPVWMQDN YLCKLISVTL DNCHGCSELP 960 YLGDLPSLKS LFIQRINGVE RFGIETSSLA TEEKHPTGFP SLEVLNICEM YDLQFWVSMR 1020 EGDFPRLFRL SISRCPKLTN LPRLISLVHV SFYYGVELPT FSELPSLESL KIEGFQKIRS 1080 INFPHHLTTL KKLEIIDCKE LLSVYAHSLS VSDLKVVRCL KLDLVGSSTE DHIGQKVVNG 1140 RNSLTRRPMV LKTLTYTNVL DDDSKWEKFG EKNIFGYIFA RSYYRCIWRN LTGCSATKIL 1200 QPDNNDANTL FVMYISEHNH GFSNEPHLEL QSQLGTGRKR KEYDVSSDEN TSRKQLHDSS 1260 VSAASSVPRP ATGEATPSSA EELKAKKMGR PRKPNPRVFG PEWSIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j5t_C | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j5t_F | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j5t_G | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j5t_L | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j5t_O | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j5u_A | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j5v_A | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j5w_A | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j6i_C | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j6i_F | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j6i_G | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j6i_L | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
6j6i_O | 5e-38 | 362 | 1060 | 177 | 847 | Disease resistance RPP13-like protein 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G104400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459691.2 | 0.0 | uncharacterized protein LOC8057272 | ||||
TrEMBL | A0A1B6QAD6 | 0.0 | A0A1B6QAD6_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G382273_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45260.1 | 3e-12 | Disease resistance protein (TIR-NBS-LRR class) |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G104400.3.p |