PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G104400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 1656aa MW: 184104 Da PI: 6.866 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 46.9 | 5.7e-15 | 1510 | 1569 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dD +W K+G K++ g f+rsYYrC + gC+++k ++ +++d +++ ++Y +eHnh Sobic.002G104400.1.p 1510 DDDSKWEKFGEKNIFGYIFARSYYRCIWRnltGCSATKILQPDNNDANTLFVMYISEHNH 1569 8999**********************9887889*************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52058 | 2.04E-28 | 495 | 663 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 8.7E-29 | 496 | 668 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00367 | 110 | 519 | 539 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 28 | 567 | 594 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 520 | 615 | 639 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SuperFamily | SSF52540 | 2.33E-38 | 698 | 938 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 4.3E-5 | 703 | 834 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00364 | 1.1E-10 | 718 | 733 | No hit | No description |
Pfam | PF00931 | 3.7E-35 | 720 | 965 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 1.1E-10 | 788 | 802 | No hit | No description |
PRINTS | PR00364 | 1.1E-10 | 885 | 899 | No hit | No description |
SuperFamily | SSF52058 | 5.55E-33 | 1001 | 1216 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 8.3E-12 | 1036 | 1197 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 1.1E-10 | 1123 | 1139 | No hit | No description |
SuperFamily | SSF52058 | 5.55E-33 | 1258 | 1454 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 6.4E-11 | 1260 | 1465 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00367 | 65 | 1373 | 1402 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Gene3D | G3DSA:2.20.25.80 | 7.1E-16 | 1498 | 1570 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-16 | 1503 | 1571 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.35 | 1504 | 1572 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-13 | 1509 | 1571 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-14 | 1510 | 1569 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1656 aa Download sequence Send to blast |
MDATASESDP SSPRSRQLLP PIDATMASDP SPPPHRRQLR GPRPPRLDVR MESHKIKKPT 60 AVTPQPYKRS HLHLRWSRVK EIHCEPTDFK ALVQRHTGPV ATAPPDCTEM QYAGRSVVWS 120 PPVRPSRIAA VVVSASARLA ATVRAVGADS LVAADADSSL AAVLSLPRRP PGILSPAALP 180 PAACSGQFSA TPFDPSCLPW LKDKDKELSL QSPFFLPAGV EELQCLFTLN PRTRLLPAPG 240 MPPCPATVVS TAAGLSENNV LEIEIESGNG EGVPAGPVGD AERSPKAEPA GDLQVGACLA 300 SIKRLFQQLV HVRTIISSFS GKLPSDAWFN HVKHLTSDAE ESLEHLHYQM MLAKLGVGVG 360 THLEKVMPKV SGTRSKTTAI SFMHLLASQE LVILPVTDKL EGLRHGSPGL SGVVLGNYSD 420 MLSLSSSVIR CILLCRGILG IINMVNMEGK DKSLELPVFA FDDLTYAGLN KGIGMNAHSV 480 PARMTDPIYL LPMFTRSLLC LDLSSYSGLT QLPPSIGNLS NLAALNLSHC YSLQTLTVSI 540 GSLKNLQTLV LSCCHELRNL PVSLCELSKL RLLDLAGCSS LENLPASLVN LGNLENLNLS 600 YCKELKELPQ PFGNLQELKY LNLSGSHRVD LDVECLCTLA NLKSLTLSPL TNIQGFPDSF 660 KDLANRLDSL RWWKKNQIHP QCGPKAASLQ SYRCYEQSII DMLLSDEADN SSDQIVTSAC 720 IVGESGMGKT ELVHQIYNNR MIFDTFDLRI WLNMCDKKRL LGKIVELTTC ASCSDASISV 780 LEEIVIEELT SKRLLLVLDD SEIKSQYFWG YIRKLLNVCA KGSAVIVTTK SKEVANQIGA 840 MQTFYLSPLS KEECFMIFKE HVLEDLAMNN YCQLESIGWK FVEKCGGNPM CIKVLSGLLC 900 HSEIGLSEID MIVDGILPAL RLCYDLLPAH LQQCFKFCSL FPKDYIFVKH HIIRLWIAEG 960 FVFCEEGTKP EDTALHYFDQ LFCRSFFQRS PFHSDHKDSF VMHELFHDLA HSVSKNECFR 1020 CEEPFCSFAE NVSHLSLVLS DFKTAALSNE VRNLQSFLVV RRCLPVVRIF TLDDIFVKHR 1080 FLRALNLSYT DILELPISIG NMKHLRLLAL NNTKIKSLPI EIGQVNSLQT LELKDCCHLI 1140 DLPGSTSSLA KLRHLDVQKE WGNVNVGMPH GIGYLTDLQT LTTFNIGNDL LHCSISELKN 1200 LNGLSGHVHV TGLENIKTAN DAREANMMGK HLLEALTLEW SYQEEGMDDD MGKEIANEIL 1260 QHLQPNSNIM ELVIQNYAGN LFPVWMQDNY LCKLISVTLD NCHGCSELPY LGDLPSLKSL 1320 FIQRINGVER FGIETSSLAT EEKHPTGFPS LEVLNICEMY DLQFWVSMRE GDFPRLFRLS 1380 ISRCPKLTNL PRLISLVHVS FYYGVELPTF SELPSLESLK IEGFQKIRSI NFPHHLTTLK 1440 KLEIIDCKEL LSVYAHSLSV SDLKVVRCLK LDLVGSSTED HIGQKVVNGR NSLTRRPMVL 1500 KTLTYTNVLD DDSKWEKFGE KNIFGYIFAR SYYRCIWRNL TGCSATKILQ PDNNDANTLF 1560 VMYISEHNHG FSNEPHLELQ SQLGTGRKRK EYDVSSDENT SRKQLHDSSV SAASSVPRPA 1620 TGEATPSSAE ELKAKKMGRP RKPNPRVFGP EWSIA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j5t_C | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j5t_F | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j5t_G | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j5t_L | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j5t_O | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j5u_A | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j5v_A | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j5w_A | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_C | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_F | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_G | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_L | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
6j6i_O | 2e-37 | 711 | 1286 | 177 | 758 | Disease resistance RPP13-like protein 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G104400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459691.2 | 0.0 | uncharacterized protein LOC8057272 | ||||
TrEMBL | A0A1B6QAD6 | 0.0 | A0A1B6QAD6_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G382273_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12577 | 12 | 16 |
Representative plant | OGRP13569 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45260.1 | 4e-12 | Disease resistance protein (TIR-NBS-LRR class) |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G104400.1.p |