PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G076600.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 587aa    MW: 63839.2 Da    PI: 6.5432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G076600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13372418455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h   ErrRR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Sobic.002G076600.4.p 372 SHVLKERRRREKLNERFVMLRSLVPFV-----TKMDRASILGDTIEYVKQLR 418
                           79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-221080IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.672368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18371441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17372431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.81E-14372422No hitNo description
PfamPF000102.1E-10372417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MCLVLSHFRL PGEAFVRRVH VWLYGANKVD SKVFSRAILA RSAGIQTVAC IPVNDGVLEI  60
GTTEKVEEDI GLIQYARSIF MDQIGAHIMP TLSGHSTSTA PTTHINHQPF QTKMGCIGDI  120
NVQKTSHNSG DEHHNEMEDD GDVRIDLLQT NTGNDSSRHS PQDTNVGNEQ GTLNAGSSEL  180
MLTGTSERVR DGCSKQEDEE IPVLMVCQNN GNLVAQDEFG PWHDFVDEDL SSKYLQSSAA  240
EDQAVLAENA HYVETVLAIL RFNASRQTQA ASSNTKAYLA LSKNSSFSRW TTSWNHKASN  300
NDLQSMLIPD DEGAPQRLLK SILLGAPSSS SHPSYKGADA AVHSSPEPRD DGEGTSRSRR  360
APPVQPAELS ASHVLKERRR REKLNERFVM LRSLVPFVTK MDRASILGDT IEYVKQLRRR  420
IQELESSRGR LVDSNPRTTA MAPPPPPPAA STETTRRGHH TSGGYLARAG TGTGTGTAAE  480
ASASGSCCNS SVGEHEHHLA GDTEVQVSII GSDALLELRC PHREGLLLRV MQALHQELRL  540
EVTSVQASSA GDVLLAELRA KVKEVHGRRS SITEVKRAIH LIVSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376381ERRRRE
2377382RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G076600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU578992e-79U57899.1 Zea mays repressor-like protein (in1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310268.10.0basic helix-loop-helix protein A
TrEMBLA0A1W0W2Q90.0A0A1W0W2Q9_SORBI; Uncharacterized protein
STRINGSb02g006390.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.13e-33bHLH family protein