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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G076600.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 596aa MW: 64945.7 Da PI: 6.3733 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.2e-13 | 381 | 427 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f Lr+l+P +K++ a+iL ++eY+k+L+ Sobic.002G076600.3.p 381 SHVLKERRRREKLNERFVMLRSLVPFV-----TKMDRASILGDTIEYVKQLR 427 79999*********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.3E-12 | 48 | 89 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.672 | 377 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-18 | 380 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-10 | 381 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.49E-14 | 381 | 431 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-17 | 381 | 440 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-16 | 383 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MSMKLKLYID IPKVLLPSLP HDRELKVLIN SPFVTLFMWS ITNICGNKYQ SAGIQTVACI 60 PVNDGVLEIG TTEKVEEDIG LIQYARSIFM DQIGAHIMPT LSGHSTSTAP TTHINHQPFQ 120 TKMGCIGDIN VQKTSHNSGD EHHNEMEDDG DVRIDLLQTN TGNDSSRHSP QDTNVGNEQG 180 TLNAGSSELM LTGTSERVRD GCSKQEDEEI PVLMVCQNNG NLVAQDEFGP WHDFVDEDLS 240 SKYLQSSAAE DQAVLAENAH YVETVLAILR FNASRQTQAA SSNTKAYLAL SKNSSFSRWT 300 TSWNHKASNN DLQSMLIPDD EGAPQRLLKS ILLGAPSSSS HPSYKGADAA VHSSPEPRDD 360 GEGTSRSRRA PPVQPAELSA SHVLKERRRR EKLNERFVML RSLVPFVTKM DRASILGDTI 420 EYVKQLRRRI QELESSRGRL VDSNPRTTAM APPPPPPAAS TETTRRGHHT SGGYLARAGT 480 GTGTGTAAEA SASGSCCNSS VGEHEHHLAG DTEVQVSIIG SDALLELRCP HREGLLLRVM 540 QALHQELRLE VTSVQASSAG DVLLAELRAK VKEVHGRRSS ITEVKRAIHL IVSSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 385 | 390 | ERRRRE |
2 | 386 | 391 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G076600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ZMU57899 | 2e-79 | U57899.1 Zea mays repressor-like protein (in1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310268.1 | 0.0 | basic helix-loop-helix protein A | ||||
TrEMBL | A0A1W0W2V5 | 0.0 | A0A1W0W2V5_SORBI; Uncharacterized protein | ||||
STRING | Sb02g006390.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 2e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G076600.3.p |